Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1465 ATGACAGGTGCTACGTTGTCGTCGGAGGTTGAACCGGTCGAGCCGCAGTCACTGAAGAAGCTCAGCTTCAAGTCCCTGAAGCGCGCACTCGATCTCTTCTCTCCCACTCACTCTCACCTCGCTCCTCCCGATCCCCACAGCAAGAGAATTCGCACTACCCACAAGGTACTTGTGGAGTATGGTGGAATCAGACTCTCTACTACTCAAGCTCCTCGTCAAGCTAATTCCGCGGCGCAAGGTCAAGCTCAACCGGGGCCATCTAATGCACTTGCTCTTCCGGGTCCAGGAGATTCCAAAGATCCCCAGAAAGGAGGACCCCAAAATGCTTTGGTTGTTGGTCCAACTATGCCGTCAACAGCTTCGAATGATCGTGGTTTTACAGGCAAAAGCACAGCAGTTATTTCTGCTTCTTCTGGTTCATCTGAAAGGAATTTATCCACAGCTGCTTTAATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGATTGGCATGCCCCATGGAAGAATTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGCAATACATGGTTTTGTACTGGTTCTGCAGATCGTACCATCAAGATATGGGATTTAGCTAGTGGAAGGCTAAAGCTCACACTGACTGGCCACATCGAGCAAATAAGAGCAGCAAGCATACTTACATGTTCTCTGCTGGTGAATGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCCTATCATGGTCATCTTAGTGGTGTCTACTGCTTGGCTCTTCATCCAACAATTGACATTTTACTTACTGGAGGGCGTGATTCTGTCTGCCGGGTCTGGGACATCCGTAGTAAAATGCAAATTCATGCTCTTTCAGGACATGATAATACTGTCTGCTCTGTATTTACACGGGCAACGGATCCCCAAGTTGTTACAGGTTCTCATGACAGCACCATCAAGATGTGGGATCTAAGATATGGTAAAACAATGTTAACCCTTACAAACCACAAAAAATCTGTTAGAGCCATGGCACAACATCCTAAAGAGCAAGCTTTTGCATCAGCATCAGCTGATAATATTAAGAAATTCAGCCTCCCAAAGGGAGAGTTTTTTCACAATATGCTCTCTCAACAGAAAACTATCATCAATACGATGGCTGTCAACGAGGAGGGTGTGATGGTTACAGGAGGTGACAATGGGAGTCTCTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCGCAGACAATTGTGCAGCCTGGTTCMCTGGACAGTGAAGCTGGTATTTATGCTTGTACCTACGATGTAACGGGTTCAAGGCTTATAACATGTGAAGCTGACAAGACAATCAAAATGTGGAAAGAAGATGAAACTGCCACTCCTGAAACCCATCCTCTTAATTTCAGGCCCCCTAAAGACATCAGGCGATTTTAG 1452 0.4594 MTGATLSSEVEPVEPQSLKKLSFKSLKRALDLFSPTHSHLAPPDPHSKRIRTTHKVLVEYGGIRLSTTQAPRQANSAAQGQAQPGPSNALALPGPGDSKDPQKGGPQNALVVGPTMPSTASNDRGFTGKSTAVISASSGSSERNLSTAALMERMPSKWPRPDWHAPWKNYRVISGHLGWVRSVAVDPSNTWFCTGSADRTIKIWDLASGRLKLTLTGHIEQIRAASILTCSLLVNDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRATDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAQHPKEQAFASASADNIKKFSLPKGEFFHNMLSQQKTIINTMAVNEEGVMVTGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYACTYDVTGSRLITCEADKTIKMWKEDETATPETHPLNFRPPKDIRRF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1465 483 CDD WD40 169 460 - -
Amo14g1465 483 SMART WD40_4 330 368 IPR001680 GO:0005515
Amo14g1465 483 SMART WD40_4 288 327 IPR001680 GO:0005515
Amo14g1465 483 SMART WD40_4 166 205 IPR001680 GO:0005515
Amo14g1465 483 SMART WD40_4 208 243 IPR001680 GO:0005515
Amo14g1465 483 SMART WD40_4 422 460 IPR001680 GO:0005515
Amo14g1465 483 SMART WD40_4 246 285 IPR001680 GO:0005515
Amo14g1465 483 SMART WD40_4 371 410 IPR001680 GO:0005515
Amo14g1465 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
Amo14g1465 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Amo14g1465 483 PANTHER BNAA01G27690D PROTEIN 13 483 - -
Amo14g1465 483 Gene3D - 152 483 IPR015943 GO:0005515
Amo14g1465 483 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 13 483 IPR045241 GO:0000398
Amo14g1465 483 MobiDBLite consensus disorder prediction 70 127 - -
Amo14g1465 483 MobiDBLite consensus disorder prediction 70 86 - -
Amo14g1465 483 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Amo14g1465 483 MobiDBLite consensus disorder prediction 112 127 - -
Amo14g1465 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 329 - -
Amo14g1465 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Amo14g1465 483 MobiDBLite consensus disorder prediction 464 483 - -
Amo14g1465 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Amo14g1465 483 SUPERFAMILY WD40 repeat-like 163 460 IPR036322 GO:0005515
Amo14g1465 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 210 - -
Amo14g1465 483 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Amo14g1465 483 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Amo14g1465 483 Pfam WD domain, G-beta repeat 168 205 IPR001680 GO:0005515
Amo14g1465 483 Pfam WD domain, G-beta repeat 292 327 IPR001680 GO:0005515
Amo14g1465 483 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Amo14g1465 483 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Amo14g1465 483 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1465 Amo-Chr14 24847565 24855725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1465 250 459 Miscellaneous Gene Families AT5G08390 29.630 8.36e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1465 K12862 - gmx:100775526 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1465 14 24847565 24855725 Amo14g1465 14 24847565 24855725 ECH
Amo14g1465 14 24847565 24855725 Amo04g0343 04 6079695 6088197 hybridization