Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0343 ATGACAAGTGCTACGTCGTCGTCGGAGGTTGAACCGGTCGAGCCGCAGTCACTGAAGAAGCTCAGCTTCAAGTCCCTGAAGCGCGCACTCGATCTCTTCTCTCCCACTCACTCTCACCTCGCTCCTCCCGATCCCCACAGCAAGAGAATTCGCACTACCCACAAGGTACTTGTGGAGTATGGTGGAATCAAACTCTCTACTACTCAAGCTCCTCGTCAAGCTAATTCCGCGGCGCAAGGTCAAGCTCAACCGGGGCCATCTAATGCACTTGCTCTTCTGGGTCCAGGAGATTCCAAAGATACCCAGAAAGGAGGACCCCAAAATGCTTTGGTTGTTGGTCCAACTATGCCGTCAACAGCTTCGAATGATCGTGGTTTTACAGGCAAAAGCACAGCAGTTATTTCTGCTTCTTCTGGTTCATCTGAAAGGAATTTATCCACAGCTGCTTTAATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGATTGGCATGCCCCATGGAAGAATTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGCAATACATGGTTTTGTACTGGTTCTGCAGATCGTACCATCAAGATATGGGATTTAGCTAGTGGAAGGCTAAAGCTCACACTGACTGGCCACATCGAGCAAATAAGAGGCCTTGCTGTCAGCAGCAAGCATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCCTATCATGGTCATCTTAGTGGTGTCTACTGCTTGGCTCTTCATCCAACAATTGACATTTTACTTACTGGAGGGCGTGATTCTGTCTGCCGGGTCTGGGACATCCGTAGTAAAATGCAAATTCATGCTCTTTCAGGACATGATAATACTGTCTGCTCTGTATTTACACGGGCAACGGATCCCCAAGTTGTTACAGGTTCTCATGACAGCACCATCAAGATGTGGGATCTAAGATATGGTAAAACAATGTTAACCCTTACAAACCACAAAAAATCTGTTAGAGCCATGGCACAACATCCTAAAGAGCAAGCTTTTGCATCAGCATCAGCTGATAATATTAAGAAATTCAGCCTCCCAAAGGGAGAGTTTTTTCACAATATGCTCTCTCAACAGAAAACTATCATCAATACGATGGCTGTCAACGAGGAGGGTGTGATGGTTACAGGAGGTGACAATGGGAGTCTCTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCGCAGACAATTGTGCAGCCTGGTTCCCTGGACAGTGAAGCTGGTATTTATGCTTGTACCTACGATGTAACGGGTTCAAGGCTTATAACATGTGAAGCTGACAAGACAATCAAAATGTGGAAAGAAGATGAAACTGCCACTCCTGAAACCCATCCTCTTAATTTCAGGCCCCCTAAAGACATCAGGCGATTTTAG 1464 0.4597 MTSATSSSEVEPVEPQSLKKLSFKSLKRALDLFSPTHSHLAPPDPHSKRIRTTHKVLVEYGGIKLSTTQAPRQANSAAQGQAQPGPSNALALLGPGDSKDTQKGGPQNALVVGPTMPSTASNDRGFTGKSTAVISASSGSSERNLSTAALMERMPSKWPRPDWHAPWKNYRVISGHLGWVRSVAVDPSNTWFCTGSADRTIKIWDLASGRLKLTLTGHIEQIRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRATDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAQHPKEQAFASASADNIKKFSLPKGEFFHNMLSQQKTIINTMAVNEEGVMVTGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYACTYDVTGSRLITCEADKTIKMWKEDETATPETHPLNFRPPKDIRRF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0343 487 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Amo04g0343 487 Pfam WD domain, G-beta repeat 252 289 IPR001680 GO:0005515
Amo04g0343 487 Pfam WD domain, G-beta repeat 211 247 IPR001680 GO:0005515
Amo04g0343 487 Pfam WD domain, G-beta repeat 296 331 IPR001680 GO:0005515
Amo04g0343 487 Pfam WD domain, G-beta repeat 168 205 IPR001680 GO:0005515
Amo04g0343 487 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 252 - -
Amo04g0343 487 Gene3D - 152 487 IPR015943 GO:0005515
Amo04g0343 487 SMART WD40_4 292 331 IPR001680 GO:0005515
Amo04g0343 487 SMART WD40_4 166 205 IPR001680 GO:0005515
Amo04g0343 487 SMART WD40_4 250 289 IPR001680 GO:0005515
Amo04g0343 487 SMART WD40_4 426 464 IPR001680 GO:0005515
Amo04g0343 487 SMART WD40_4 334 372 IPR001680 GO:0005515
Amo04g0343 487 SMART WD40_4 375 414 IPR001680 GO:0005515
Amo04g0343 487 SMART WD40_4 208 247 IPR001680 GO:0005515
Amo04g0343 487 MobiDBLite consensus disorder prediction 69 86 - -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Amo04g0343 487 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 13 487 IPR045241 GO:0000398
Amo04g0343 487 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Amo04g0343 487 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Amo04g0343 487 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Amo04g0343 487 PANTHER BNAA01G27690D PROTEIN 13 487 - -
Amo04g0343 487 CDD WD40 169 464 - -
Amo04g0343 487 MobiDBLite consensus disorder prediction 112 127 - -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Amo04g0343 487 MobiDBLite consensus disorder prediction 468 487 - -
Amo04g0343 487 SUPERFAMILY WD40 repeat-like 163 464 IPR036322 GO:0005515
Amo04g0343 487 MobiDBLite consensus disorder prediction 69 127 - -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 210 - -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 333 - -
Amo04g0343 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0343 Amo-Chr4 6079695 6088197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0343 215 463 Miscellaneous Gene Families AT5G08390 21.514 2.63e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0343 K12862 - gmx:100775526 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1465 14 24847565 24855725 Amo04g0343 04 6079695 6088197 hybridization