Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1464 ATGAACTTGATACTTGAAAGGTTGATGAAAGTTGGGCAATGTGGTGTTGCCAAGAAGGTGTTTGTTAAAATGCCTGTTCGAGATGTTGTTTCTTGGAACACCATGATTGGAGGGTACGTGAAGAACTCGCGGGTTGTTGATGCACTGAGCATTTTCAGGGGGATGCTGAATGCTAAAGTTGAGCCCGACGGGTTCACATTTGCTTCTGTGGTTACTGCGTGCGCACGCCTTGGGGCTCTTGCTAATGCCAAGTGGGTGCATACTTTGATGGTGGAGAAGAGGATTGAGCTGAACTATATACTTAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGAATTGATGTTTCAAAATGTGTTTTTGAAGATGGTGTGCGCAATCATGTGTCAGTTTGGAATGCTATGATTAATGGGTTGGCAATTCATGGGCTTGCTTTGGATGCAGCTGCAGTGTTTTCTAGGATGGAGATGGAAAATGTTTCACCTGATAGTCCGCAACTTGAGCATTATGGAACCATGGTTGATCTGTTAGGACGATCAGGGCTTTTGGATGACGCGTATGACATGATTAAAGCAATGCCAATTGAGCCCGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAAACCATAGAAAGAAAGAACTTGGTGAAGTTGCAATTGCCAATATATCACGTCTTGAGAGTGGTCTAGCAATCCTCTACTTTGCATACAGAAGAAAAGCACCAATTTACTTGATAGACTTTACCTGCTACCGTCCACCTAGTTCTCATAGGCTACCTATTGCCATGTTTGAAGAGAATAGTGTTTTAGATGATTTAGATCCAGAGTCTGTTGCTTTCCAGTGCAAGATCATAGCGAAATCTGGATTCAGTGAGGAAACAGCCATTACTCCATCTTTAGCACAGATACCAAAAGTAAAATCTCTTGCCTTAGCCCTTGATGAGGTCGAAACCATAATGTGTTCAGCAATCTCAGACCTGTTTTGGAGAAACAACATCAACCCGAAATCCATCGACATACTAATCACCAACAGTTGTGTGTTCTGTCCTACACCATCTCTTAGTGCCATGGTGGTTAACAAGTTCAAGATGAGGAGCAACATCATGAGCTTCAACCTATCAGGTATGGGGTGTAGCGCCGGAATCATATCGGTWAGTCTGGCTAAGGACTTGTTGAGGGTTCATAGGGGCTCATTAGCTCTAATTGTGAGCTCAGAGACCCTTAATCTGAATTGGTACACAGATGATCAAGCTCATAGATGTGTCTACCAGGATGTGGATCCAGAAAACAAAGAAGGTATTKCGATATCAAAGGATGTTGTCCATGTGGCCGGAGATACATTGAAGAAGAACATAGCTTCACTAGGGCCATTAGTGTTGTATRGAAGAAGATCARGCATCTATACTCCAAATTTCAATCTCGCCTTCGAGCATTTCTGCATACAYTCCGGGGGAAGATCTGTCATAAATGCCATYGAGAGAAGCTTGAGGTTAAGGAAACAGGACGTGGAAGCATCCAACATGACCCTTTACAGRTTTGGAAACACGTCGTCTTCTTCGATTTGGTATGAGCTTAGCTACACAGAAGCGAAAGGGAGGATGAAACGTGGCGATAGGGTGTGGCAAATCGCCATTGGAAGCGGATTCAAGTGTAGCAGCGCKGTGTGGAAATGTTTACAGGACGTGACCCCGGACAATGGCAGTGCTTGGAGGGATACAATTAACATGTACCCTGTACAAAGAAATTTTTTTTGGAATACATGCTACAAGAGGGTAAGAGAGAACCGTCAAGAGAGCCTTTGGAATCGCCGAATAGCCTTTGTCGGAAATCAGAGACCATTCTSGGAAGTCCTTCGCGGAGGGACACGGTGGGCTGCCAGCCGAGAAGCTCTTTGGCTTTGGAAATGTCTGGCTTCCTCTTATGAGGATCATCCTCTGTGTTTGGCCTAA 1959 0.441 MNLILERLMKVGQCGVAKKVFVKMPVRDVVSWNTMIGGYVKNSRVVDALSIFRGMLNAKVEPDGFTFASVVTACARLGALANAKWVHTLMVEKRIELNYILSAALIDMYAKCGRIDVSKCVFEDGVRNHVSVWNAMINGLAIHGLALDAAAVFSRMEMENVSPDSPQLEHYGTMVDLLGRSGLLDDAYDMIKAMPIEPDVVIWRALLSACRNHRKKELGEVAIANISRLESGLAILYFAYRRKAPIYLIDFTCYRPPSSHRLPIAMFEENSVLDDLDPESVAFQCKIIAKSGFSEETAITPSLAQIPKVKSLALALDEVETIMCSAISDLFWRNNINPKSIDILITNSCVFCPTPSLSAMVVNKFKMRSNIMSFNLSGMGCSAGIISVSLAKDLLRVHRGSLALIVSSETLNLNWYTDDQAHRCVYQDVDPENKEGIXISKDVVHVAGDTLKKNIASLGPLVLYXRRSXIYTPNFNLAFEHFCIHSGGRSVINAIERSLRLRKQDVEASNMTLYRFGNTSSSSIWYELSYTEAKGRMKRGDRVWQIAIGSGFKCSSAVWKCLQDVTPDNGSAWRDTINMYPVQRNFFWNTCYKRVRENRQESLWNRRIAFVGNQRPFXEVLRGGTRWAASREALWLWKCLASSYEDHPLCLA* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1464 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Amo14g1464 652 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 228 417 - -
Amo14g1464 652 SUPERFAMILY Thiolase-like 235 422 IPR016039 GO:0016746
Amo14g1464 652 Gene3D Tetratricopeptide repeat domain 119 233 IPR011990 GO:0005515
Amo14g1464 652 TIGRFAM PPR: pentatricopeptide repeat domain 30 63 IPR002885 -
Amo14g1464 652 TIGRFAM PPR: pentatricopeptide repeat domain 132 165 IPR002885 -
Amo14g1464 652 CDD CHS_like 232 559 - -
Amo14g1464 652 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 480 560 IPR013747 -
Amo14g1464 652 SUPERFAMILY Thiolase-like 410 561 IPR016039 GO:0016746
Amo14g1464 652 Pfam PPR repeat 132 160 IPR002885 -
Amo14g1464 652 Pfam PPR repeat 170 194 IPR002885 -
Amo14g1464 652 Pfam PPR repeat family 27 76 IPR002885 -
Amo14g1464 652 Pfam FAE1/Type III polyketide synthase-like protein 240 417 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo14g1464 652 Pfam FAE1/Type III polyketide synthase-like protein 418 464 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo14g1464 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Amo14g1464 652 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 418 583 - -
Amo14g1464 652 PANTHER 3-KETOACYL-COA SYNTHASE 228 417 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo14g1464 652 PANTHER 3-KETOACYL-COA SYNTHASE 418 583 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo14g1464 652 Gene3D Tetratricopeptide repeat domain 1 118 IPR011990 GO:0005515
Amo14g1464 652 Gene3D - 260 422 IPR016039 GO:0016746
Amo14g1464 652 Gene3D - 423 565 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1464 Amo-Chr14 24836593 24841173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1464 232 586 Miscellaneous Gene Families AT1G19440 45.346 7.01e-125 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1464 K15397 - gmx:100783404 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1464 14 24836593 24841173 Amo04g0342 04 6050239 6060783 hybridization