Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0342 ATGAACTTGATACTTGAAAGGTTGATGAAAGTTGGGCAATGTGGTGTTGCCAAGAAGGTGTTTGTTAAAATGCCTGTTCGAGATGTTGTTTCTTGGAACACCATGATTGGAGGGTACGTGAAGAACTCGCGGGTTGTTGATGCACTGAGCATTTTCAGGGGGATGCTGAATGCTAAAGTTGAGCCCGACGGGTTCACATTTGCTTCTGTGGTTACTGCGTGCGCACGCCTTGGGGCTCTTGCTAATGCCAAGTGGGTGCATACTTTGATGGTGGAGAAGAGGATTGAGCTGAACTATATACTTAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGAATTGATGTTTCGAAATGTGTTTTTGAAGATGGTGTGCGCAATCATGTGTCAGTTTGGAATGCTATGATTAATGGGTTGGCAATTCACGGGCTTGCTTTGGATGCAGCTGCAGTGTTTTCTAGGATGGAGATGGAAAATGTTTCACCTGATAGTCCGCAACTTGAGCATTATGGAACCATGGTTGATCTGTTAGGACGATCAGGGCTTTTGGATGACGCGTATGACATGATTAAAGCAATGCCAATTGAGCCCGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAAACCATAGAAAGAAAGAACTTGGTGAAGTTGCAATTGCCAATATATCACGTCTTGAGAGTGGTCTAGCAATCCTCTACTTTGCATACAGAAGAAAAGCACCAATTTACTTGATAGACTTTACCTGCTACCGTCCACCTAGTTCTCATAGGCTACCTATTGCCATGTTTGAAGAGAATAGTGTTTTAGATGATTTAGATCCAGAGTCTGTTGCTTTCCAGTGCAAGATCATAGCGAAATCTGGATTCAGTGAGGAAACAGCCATTACTCCATCTTTAGCACAGATACCAAAAGTAAAATCTCTTGCCTTAGCCCTTGATGAGGTCGAAACCATAATGTGTTCAGCAATCTCAGACCTGTTTTGGAGAAACAACATCAACCCGAAATCCATCGACATACTAATCACCAACAGTTGTGTGTTCTGTCCTACACCATCTCTTAGTGCCATGGTGGTTAACAAGTTCAAGATGAGGAGCAACATCATGAGCTTCAACCTATCAGGTATGGGGTGTAGCGCCGGAATCATATCGGTCAGTCTGGCTAAGGACTTGTTGAGGGTTCATAGGGGCTCATTAGCTCTAATTGTGAGCTCAGAGACCCTTAATCTGAATTGGTACACAGATGATCAAGCTCATAGATGTGTCTACCAGGATGTGGATCCAGAAAACAAAGAAGGTATTGCGATATCAAAGGATGTTGTCCATGTGGCCGGAGATACATTGAAGAAGAACATAGCTTCACTAGGGCCATTAGTGTTGTATGGAAGAAGATCAGGCATCTATACTCCAAATTTCAATCTCGCCTTCGAGCATTTCTGCATACACTCCGGGGGAAGATCTGTCATAAATGCCATTGAGAGAAGCTTGAGGTTAAGGAAACAGGACGTGGAAGCATCCAACATGACCCTTTACAGGTTTGGAAACACGTCGTCTTCTTCGATTTGGTATGAGCTTAGCTACACAGAAGCGAAAGGGAGGATGAAACGTGGCGATAGGGTGTGGCAAATCGCCATTGGAAGCGGATTCAAGTGTAGCAGCGCGGTGTGGAAATGTTTACAGGACGTGACCCCGGACAATGGCAGTGCTTGGAGGGATACAATTAACATGTACCCTGTACAAAATTTTTTTTGGAATACATGCTACAAGAGGGTAAGAGAGAACCGTCAAGAGAGCCTTTGGAATCGCCGAATAGCCTTTGTCGGAAATCAGAGACCATTCTTGGAAGTCCTTCGCGGAGGGACACGGTGGGCTGCCAGCCGAGAAGCTCTTTGGCTTTGGAAATGTCTGGCTTCCTCTTATGAGGATCATCCTCTGTGTTTGGCCTAA 1956 0.4458 MNLILERLMKVGQCGVAKKVFVKMPVRDVVSWNTMIGGYVKNSRVVDALSIFRGMLNAKVEPDGFTFASVVTACARLGALANAKWVHTLMVEKRIELNYILSAALIDMYAKCGRIDVSKCVFEDGVRNHVSVWNAMINGLAIHGLALDAAAVFSRMEMENVSPDSPQLEHYGTMVDLLGRSGLLDDAYDMIKAMPIEPDVVIWRALLSACRNHRKKELGEVAIANISRLESGLAILYFAYRRKAPIYLIDFTCYRPPSSHRLPIAMFEENSVLDDLDPESVAFQCKIIAKSGFSEETAITPSLAQIPKVKSLALALDEVETIMCSAISDLFWRNNINPKSIDILITNSCVFCPTPSLSAMVVNKFKMRSNIMSFNLSGMGCSAGIISVSLAKDLLRVHRGSLALIVSSETLNLNWYTDDQAHRCVYQDVDPENKEGIAISKDVVHVAGDTLKKNIASLGPLVLYGRRSGIYTPNFNLAFEHFCIHSGGRSVINAIERSLRLRKQDVEASNMTLYRFGNTSSSSIWYELSYTEAKGRMKRGDRVWQIAIGSGFKCSSAVWKCLQDVTPDNGSAWRDTINMYPVQNFFWNTCYKRVRENRQESLWNRRIAFVGNQRPFLEVLRGGTRWAASREALWLWKCLASSYEDHPLCLA* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0342 651 Pfam PPR repeat family 27 76 IPR002885 -
Amo04g0342 651 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 480 560 IPR013747 -
Amo04g0342 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Amo04g0342 651 SUPERFAMILY Thiolase-like 235 422 IPR016039 GO:0016746
Amo04g0342 651 SUPERFAMILY Thiolase-like 410 561 IPR016039 GO:0016746
Amo04g0342 651 Pfam FAE1/Type III polyketide synthase-like protein 418 463 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo04g0342 651 Pfam FAE1/Type III polyketide synthase-like protein 240 417 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo04g0342 651 Gene3D - 260 423 IPR016039 GO:0016746
Amo04g0342 651 PANTHER 3-KETOACYL-COA SYNTHASE 418 583 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo04g0342 651 CDD CHS_like 232 559 - -
Amo04g0342 651 TIGRFAM PPR: pentatricopeptide repeat domain 30 63 IPR002885 -
Amo04g0342 651 TIGRFAM PPR: pentatricopeptide repeat domain 132 165 IPR002885 -
Amo04g0342 651 Gene3D - 424 560 IPR016039 GO:0016746
Amo04g0342 651 PANTHER 3-KETOACYL-COA SYNTHASE 228 417 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo04g0342 651 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 418 583 - -
Amo04g0342 651 Pfam PPR repeat 132 160 IPR002885 -
Amo04g0342 651 Pfam PPR repeat 170 194 IPR002885 -
Amo04g0342 651 Gene3D Tetratricopeptide repeat domain 119 233 IPR011990 GO:0005515
Amo04g0342 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Amo04g0342 651 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 228 417 - -
Amo04g0342 651 Gene3D Tetratricopeptide repeat domain 1 118 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0342 Amo-Chr4 6050239 6060783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0342 232 582 Miscellaneous Gene Families AT1G19440 45.783 4.72e-125 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0342 K15397 - gmx:100783404 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1464 14 24836593 24841173 Amo04g0342 04 6050239 6060783 hybridization