Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1401 ATGTCATCCTTAAGCAGAGAATTGGTGTTTCTCATTCTCCAATTCTTTCAAGAAGAGAACTTGAAGGACACTATTCACAAGTTGCAGCAGGAATCTGGATACTTCTTTGATATGAAGTACTTTGAAGAGAAAGCACTGAACGGAGAGTGGGAAATAGTTGAGAATTACCTATCTGGTTTCACCAAATTGACTGACAACCGTTACTCCATGAAAATGTGCTTTGAAATAAGGAAGCAGAAATATCTCGAAGCCTTGGACAGTAAGGAGAAGACAAGGGCTCTTGAAATACTGGGGAAGGATTTGAAAGTGTTCCAAACATACAATGAAGAATTATACAGAGAAATCACATATCTGTTAACCCTTGAAAACTTTAGGGATAATGAACAGTTATCAAAATATGGGGATACCAAAACAGCTAGGAAAACAATGATAGTAGAGCTTAAGAAACTGATTGACGCAAATCCCCGTTTGAATGACAAGCTTGTATTTCCTTCATTGAAGCCATCAAGGTTGCGAACACTTATTAATCAGAGTCTAAATTGGCAACATCAGCTTTGCAAGAACCCAAAGCCGAATCCGGACATAAGGACTCTATTCGTTGACCACACATGCTCTCCTCCTGGTCCGGCCGGTGCAAGCTCAGCCGCGGCAAGGTCACCATCAGTCCCAGCAGCTGTTAATCCTTCTGCGGTTGCGGCTGCGACTGGGGCCGGGACGTCTGTTCCCTTGAACCAAACCTTAGTGTCTGCATTGAAGCATTCCAGGACACCACCTACTCCTACGAATGACGAGCAGCGAGGAAAACGGTTGCGATCTGTTCCACAAGCAACAGAGACGACGAATTCTGGGATGGTCCGTCAACAAGTCCCTCGGTCTTTTGATGACCTTACTAGAACGTTGTTTTGTACATTGAATCAAGGATCAACGGTTACAAGCATGGATTTTCATCCTTCTCTTCATTCCTCACTTCTTATTGGAACTGTAAGTGGTGAAATTTCATTCTGGGAAGTAGGGCGCAATGAGAGGCCAATCTTAAAGCCTTTTGCCATTTGGAACAGTGCTACTTGCTCGGTCTTATTTCAGGCTGCGTATGCCAAGGACTCGAATATATCCGTTTGCCGTGTATCATGGAGCGCTGACGGCAGATATCTTGGGGTTGCTTTCACAAAGCATTTGGTTCATCTGTATACTTATCAAGCACCTAATGACTTAAAAGAGCATTTGGAGGTTGATGCTCATGTTGGCAGTGTCAATGATTTGGCGTTTTCTTCCCCACACAAACAGCTATGCATGGTAACTTGCGGGGATGATAAGCTCATAAAGGTGACGAAAAAGTTTCTAGATTTGAATCTAAGTAGTGTTGATGGAAAAATAAAGGCATGGTTGTTTGATAACTCGGACACAAAAGTGGAATTTGATGCTCATGGAAAATACTGCACCACAATGCTCTATAGCGCCGATGGAACTAAATTGTTTTGTTGCGGGATAAGTAAAAACAATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAATGATGGAGTTATAAAGAGAACCTATGCTGGATTCGGAAAGAAATCGATGGGCATGATGCAATTCGACACGACCAAGAATCGCTTCTTGGTTGCCGGCGAAGACAAGCTGATAAAGTTCTGGGAGTTGGACAACCCTAATATTCTAGCTAGTGTACAAGTTGATGGCAATTTATCTAGTGTTCCCCGAGTGAGGTTTAATAGGATCGGGAGTCTGCTTGCTGTAACCACCGCAGATGGCAGGGTAAAGATTTTTGCTAACGCCGACGGCATCAAGCACTTAAGGGCCATTCAAGCTTGGTCTTGCCGGGTTTCGTCCAAAGCGAATACCAATCCAGCCATGACTCATTTGGAACTCGGAGAGAGTAGCTCTGCTCGTAGATCTAAATCTTTTACGGAATTACCAGAAATACTTAAATGTCAAATGATTACTCTGCCCGATACCATGTATCCCACAGCCAAGGTTGCTCGTCTTGTCTACATGAATAACGGAGTTGGCCTTCTCGCTGTTGGTTCCAATGGGACTCAGAAGCTGTGGCGATGGAATCAAACTGAATTGAATCCTACTGGAAAGGCGATGGCAAGTGCTTGTCCAGTACTTTGGCGACCGAATTCCGGTTTTGTCATGACAAACGATGTTCCAGAAAATTCAGAAGGCGCAATTCCTTGTGCAATCATCTCAAGGAACGATTCTTATGTTTTGTCAGCATGCGGAGGAAAACTTACACTTTTCAACATGCTCTCATTTAAGGTAATGGTGAGTTTCATGTCGCCACCACCTCGTTCAACTTGCCTTGCATTTCACCCTCAAGATAATAACGTTGTTGCAATTGGAAAGGAAGATTCCTCCATCCATATTTACAACATTCAGTCGGAAGAGGTCAAAGCTAAATTGACTGGCGATGAGAAGTGCATCACTAGTTTAGCTTTCTCAATGCTGCTGGCTGTCTTGGTTTCATCAGATGCCGATGCTCAGATCTTCTTTTGGAGCACTGACACATGGAATTTGAAGAAATCATTGAAAATGTATTTGCGCGACGAAAGTCCAGTTACCGGCGATACTCAAGTGCAATTTCACTGTAATCAGATAAACTTGCTGGTATGCCACCGCGAGGTGCTAAGTCTATATGATGCATCAAGAATGGAACTGGTTATGCAGTGGGTTCCAAAGGCTCATATGTCCGGTTCCATATCATGTGCTACATACTCGGGCAATGGCAAATTGATCTATACTGCTCTCACCGATGGCAACATTGTAATATTTAATGCTGACACCTTGATGCTACGATGTCGTATCGCTCCATCTGTTTACCTCATGACCCCAAACATACCAAATAGCGAAAATGTGTATCCGGTTGTACTTGCAGCAAATCCACAGGAGCCGAATCAATTTGCAGTTGGACTGTCCAATGGAGCTATTAAGGTCATTGAGCCCAACGCTTCTCGTCGAGGGAATAATGGTAGCTGGGTGGGAAAATTTAAACGCGCGGGAAAACCTCCGCGCAACGGCGGCCGAGCATGCAGCAGTGCCATGGAGGAGACAGTGTCTGATGATGGAAACAGTGGTGCAAATACAATATAA 3111 0.4384 MSSLSRELVFLILQFFQEENLKDTIHKLQQESGYFFDMKYFEEKALNGEWEIVENYLSGFTKLTDNRYSMKMCFEIRKQKYLEALDSKEKTRALEILGKDLKVFQTYNEELYREITYLLTLENFRDNEQLSKYGDTKTARKTMIVELKKLIDANPRLNDKLVFPSLKPSRLRTLINQSLNWQHQLCKNPKPNPDIRTLFVDHTCSPPGPAGASSAAARSPSVPAAVNPSAVAAATGAGTSVPLNQTLVSALKHSRTPPTPTNDEQRGKRLRSVPQATETTNSGMVRQQVPRSFDDLTRTLFCTLNQGSTVTSMDFHPSLHSSLLIGTVSGEISFWEVGRNERPILKPFAIWNSATCSVLFQAAYAKDSNISVCRVSWSADGRYLGVAFTKHLVHLYTYQAPNDLKEHLEVDAHVGSVNDLAFSSPHKQLCMVTCGDDKLIKVTKKFLDLNLSSVDGKIKAWLFDNSDTKVEFDAHGKYCTTMLYSADGTKLFCCGISKNNGDSFLVEWNENDGVIKRTYAGFGKKSMGMMQFDTTKNRFLVAGEDKLIKFWELDNPNILASVQVDGNLSSVPRVRFNRIGSLLAVTTADGRVKIFANADGIKHLRAIQAWSCRVSSKANTNPAMTHLELGESSSARRSKSFTELPEILKCQMITLPDTMYPTAKVARLVYMNNGVGLLAVGSNGTQKLWRWNQTELNPTGKAMASACPVLWRPNSGFVMTNDVPENSEGAIPCAIISRNDSYVLSACGGKLTLFNMLSFKVMVSFMSPPPRSTCLAFHPQDNNVVAIGKEDSSIHIYNIQSEEVKAKLTGDEKCITSLAFSMLLAVLVSSDADAQIFFWSTDTWNLKKSLKMYLRDESPVTGDTQVQFHCNQINLLVCHREVLSLYDASRMELVMQWVPKAHMSGSISCATYSGNGKLIYTALTDGNIVIFNADTLMLRCRIAPSVYLMTPNIPNSENVYPVVLAANPQEPNQFAVGLSNGAIKVIEPNASRRGNNGSWVGKFKRAGKPPRNGGRACSSAMEETVSDDGNSGANTI* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1401 1036 MobiDBLite consensus disorder prediction 996 1036 - -
Amo14g1401 1036 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 629 993 IPR027728 GO:0006355
Amo14g1401 1036 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 452 615 - -
Amo14g1401 1036 SMART WD40_4 758 798 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 890 932 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 403 444 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 512 552 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 801 840 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 714 755 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 297 336 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 465 509 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 353 397 IPR001680 GO:0005515
Amo14g1401 1036 SMART WD40_4 555 596 IPR001680 GO:0005515
Amo14g1401 1036 Pfam LisH-like dimerisation domain 5 33 - -
Amo14g1401 1036 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Amo14g1401 1036 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 629 993 - -
Amo14g1401 1036 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 827 1009 IPR011044 -
Amo14g1401 1036 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 234 - -
Amo14g1401 1036 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 236 442 - -
Amo14g1401 1036 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 234 IPR027728 GO:0006355
Amo14g1401 1036 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 452 615 IPR027728 GO:0006355
Amo14g1401 1036 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 236 442 IPR027728 GO:0006355
Amo14g1401 1036 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 452 845 IPR011047 -
Amo14g1401 1036 Gene3D - 291 449 IPR015943 GO:0005515
Amo14g1401 1036 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 849 IPR001680 GO:0005515
Amo14g1401 1036 SUPERFAMILY WD40 repeat-like 296 442 IPR036322 GO:0005515
Amo14g1401 1036 MobiDBLite consensus disorder prediction 250 283 - -
Amo14g1401 1036 SMART ctlh 34 92 IPR006595 -
Amo14g1401 1036 Gene3D - 450 715 IPR015943 GO:0005515
Amo14g1401 1036 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Amo14g1401 1036 Gene3D - 725 1007 IPR015943 GO:0005515
Amo14g1401 1036 SMART Lish 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1401 Amo-Chr14 23437994 23451079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1401 - - ahf:112741705 1988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1401 14 23437994 23451079 Amo04g0276 04 4570663 4580464 hybridization