Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0276 ATGAAAATGTGCTTTGAAATAAGGAAGCAGAAATATCTCGAAGCCTTGGACAGTAAGGAGAAAACAAGAGCTCTTGAAATACTGGGGAAGGATTTGAAAGTGTTCCAAACATACAATGAAGAATTATACAGAGAAATCACATATCTGTTAACCCTTGAAAACTTTAGGGATAATGAACAGTTATCAAAATATGGGGATACCAAAACAGCTAGGAAAACAATGATAGTAGAGCTTAAGAAACTGATTGACGCAAATCCCCGTTTGAATGACAAGCTTGTATTTCCTTCATTGAAGCCATCAAGGTTGCGAACACTTATTAATCAGAGTCTAAATTGGCAACATCAGCTTTGCAAGAACCCAAAGCCGAATCCGGACATAAGGACTCTATTCGTTGACCACACATGCTCTCCTCCTGGTCCGGCCGGTGCAAGCTCAGCCGCGGCAAGGTCACCATCAGTCCCAGCAGCTGTTAATCCTTCTGCGGTTGCGGCTGCGACTGGGGCCGGGACGTCTGTTCCCTTGAACCAAACCTTAGTGTCTGCATTGAAGCATTCCAGGACACCACCTACTCCTACGAATGACGAGCAGCGAGGAAAACGGTTGCGATCTGTTCCACAAGCAACAGAGACGACGAATTCTGGGATGGTCCGTCAACAAGTCCCTCGGTCTTTTGATGACCTTACTAGAACGTTGTTTTGTACATTGAATCAAGGATCAACGGTTACAAGCATGGATTTTCATCCTTCTCTTCATTCCTCACTTCTTATTGGAACTGTAAGTGGTGAAATTTCATTCTGGGAAGTAGGGCGCAATGAGAGGCCAATCTTAAAGCCTTTTGCCATTTGGAACAGTGCTACTTGCTCGGTCTTATTTCAGGCTGCGTATGCCAAGGACTCGAATATATCCGTTTGCCGTGTATCATGGAGCGCTGACGGCAGATATCTTGGGGTTGCTTTCACAAAGCATTTGGTTCATCTGTATACTTATCAAGCACCTAATGACTTAAAAGAGCATTTGGAGGTTGATGCTCATGTTGGCAGTGTCAATGATTTGGCGTTTTCTTCCCCACACAAACAGCTATGCATGGTAACTTGCGGGGATGATAAGCTCATAAAGGTGTGGGACTTAACCGGACACAACCTGTTTAACTTCCAAGGTCACGAAGCAGCGGTTTATTCTATTTGTATGAATGTGAAGGAAAACGTTGAGTACATATTTTCAAGTAGTGTTGATGGAAAAATAAAGGCATGGTTGTTTGATAACTCGGACACAAAAGTGGAATTTGATGCTCATGGAAAATACTGCACCACAATGCTCTATAGCGCCGATGGAACTAAATTGTTTTGTTGCGGGATAAGTAAAAACAATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAATGATGGAGTTATAAAGAGAACCTATGCTGGATTCGGAAAGAAATCGATGGGCATGATGCAATTCGACACGACCAAGAATCGCTTCTTGGTTGCCGGCGAAGACAAGCTGATAAAGTTCTGGGAGTTGGACAACCCTAATATTCTAGCTAGTGTACATGTTGATGGCAATTTATCAAGTGTTCCCCGAGTGAGGTTTAATAGGATCGGGAGTCTGCTTGCTGTAACCACCGCAGATGGCAGGGTAAAGATTTTTGCTAACGCCGACGGCATCAAGCACTTAAGGGCCATTCAAGCTTGGTCTTGCCGGGTTTCGTCCAAAGCGAATACCAATCCAGCCATGACTCATTTGGAACTCGGAGAGAGTAGCTCTGCTCGTAGATCTAAATCTTTTACGGAATTACCAGAAATACTTAAATGTCAAATGATTACTCTGCCCGATACCATGTATCCCACAGCCAAGGTTGCTCGTCTTGTCTACATGAATAACGGAGTTGGCCTTCTCGCTGTTGGTTCCAATGGGACTCAGAAGCTGTGGCGATGGAATCAAACTGAATTGAATCCTACTGGAAAGGCGATGGCAAGTGCTTGTCCAGTACTTTGGCGACCGAATTCCGGTTTTGTCATGACAAACGATGTTCCAGAAAATTCAGAAGGCGCAATTCCTTGTGCAATCATCTCAAGGAACGATTCTTATGTTTTGTCAGCATGCGGAGGAAAACTTACACTTTTCAACATGCTCTCATTTAAGGTAATGGTGAGTTTCATGTCGCCACCACCTCGTTCAACTTGCCTTGCATTTCACCCTCAAGATAATAACGTTGTTGCAATTGGAAAGGAAGATTCCTCCATCCATATTTACAACATTCAGTCGGAAGAGGTCAAAGCTAAATTGACTGGCGATGAGAAGTGCATCACTAGTTTAGCTTTCTCAATGCTGCTGGCTGTCTTGGTTTCATCAGATGCCGATGCTCAGATCTTCTTTTGGAGCACTGACACATGGAATTTGAAGAAATCATTGAAAATGTATTTGCGCGACGAAAGTCCAGTTACCGGCGATACTCAAGTGCAATTTCACTGTAATCAGATAAACTTGCTGGTATGCCACCGCGAGGTGCTAAGTCTATATGATGCATCAAGAATGGAACTGGTTATGCAGTGGGTTCCAAAGGCTCATATGTCCGGTTCCATATCATGTGCTACATACTCGGGCAATGGCAAATTGATCTATACTGCTCTCACCGATGGCAACATTGTAATATTTAATGCTGACACCTTGATGCTACGATGTCGTATCGCTCCATCTGTTTACCTCATGACCCCAAACATACCAAATAGCGAAAATGTGTATCCGGTTGTACTTGCAGCAAATCCACAGGAGCCGAATCAATTTGCAGTTGGACTGTCCAATGGAGCTATTAAGGTCATTGAGCCCAACGCTTCTCGTCGAGGGAATAATGGTAGCTGGGTGGGAAAATTTAAACGCGCGGGAAAACCTCCGCGCAACGGCGGCCGAGCATGCAGCAGTGCCATGGAGGAGACAGTGTCTGATGATGGAAACAGTGGTGCAAATACAATATAA 2979 0.4411 MKMCFEIRKQKYLEALDSKEKTRALEILGKDLKVFQTYNEELYREITYLLTLENFRDNEQLSKYGDTKTARKTMIVELKKLIDANPRLNDKLVFPSLKPSRLRTLINQSLNWQHQLCKNPKPNPDIRTLFVDHTCSPPGPAGASSAAARSPSVPAAVNPSAVAAATGAGTSVPLNQTLVSALKHSRTPPTPTNDEQRGKRLRSVPQATETTNSGMVRQQVPRSFDDLTRTLFCTLNQGSTVTSMDFHPSLHSSLLIGTVSGEISFWEVGRNERPILKPFAIWNSATCSVLFQAAYAKDSNISVCRVSWSADGRYLGVAFTKHLVHLYTYQAPNDLKEHLEVDAHVGSVNDLAFSSPHKQLCMVTCGDDKLIKVWDLTGHNLFNFQGHEAAVYSICMNVKENVEYIFSSSVDGKIKAWLFDNSDTKVEFDAHGKYCTTMLYSADGTKLFCCGISKNNGDSFLVEWNENDGVIKRTYAGFGKKSMGMMQFDTTKNRFLVAGEDKLIKFWELDNPNILASVHVDGNLSSVPRVRFNRIGSLLAVTTADGRVKIFANADGIKHLRAIQAWSCRVSSKANTNPAMTHLELGESSSARRSKSFTELPEILKCQMITLPDTMYPTAKVARLVYMNNGVGLLAVGSNGTQKLWRWNQTELNPTGKAMASACPVLWRPNSGFVMTNDVPENSEGAIPCAIISRNDSYVLSACGGKLTLFNMLSFKVMVSFMSPPPRSTCLAFHPQDNNVVAIGKEDSSIHIYNIQSEEVKAKLTGDEKCITSLAFSMLLAVLVSSDADAQIFFWSTDTWNLKKSLKMYLRDESPVTGDTQVQFHCNQINLLVCHREVLSLYDASRMELVMQWVPKAHMSGSISCATYSGNGKLIYTALTDGNIVIFNADTLMLRCRIAPSVYLMTPNIPNSENVYPVVLAANPQEPNQFAVGLSNGAIKVIEPNASRRGNNGSWVGKFKRAGKPPRNGGRACSSAMEETVSDDGNSGANTI* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0276 992 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 169 571 IPR027728 GO:0006355
Amo04g0276 992 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 586 949 IPR027728 GO:0006355
Amo04g0276 992 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 164 IPR027728 GO:0006355
Amo04g0276 992 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 362 801 IPR011047 -
Amo04g0276 992 MobiDBLite consensus disorder prediction 952 992 - -
Amo04g0276 992 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Amo04g0276 992 Gene3D - 617 906 IPR015943 GO:0005515
Amo04g0276 992 MobiDBLite consensus disorder prediction 181 214 - -
Amo04g0276 992 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 164 - -
Amo04g0276 992 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 586 949 - -
Amo04g0276 992 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 169 571 - -
Amo04g0276 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 764 805 IPR001680 GO:0005515
Amo04g0276 992 Pfam WD domain, G-beta repeat 341 375 IPR001680 GO:0005515
Amo04g0276 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 417 IPR001680 GO:0005515
Amo04g0276 992 Gene3D - 480 602 IPR015943 GO:0005515
Amo04g0276 992 Gene3D - 156 469 IPR015943 GO:0005515
Amo04g0276 992 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 783 965 IPR011044 -
Amo04g0276 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 376 IPR001680 GO:0005515
Amo04g0276 992 SUPERFAMILY WD40 repeat-like 227 417 IPR036322 GO:0005515
Amo04g0276 992 SMART WD40_4 284 328 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 334 375 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 670 711 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 421 465 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 468 508 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 511 552 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 757 796 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 714 754 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 228 267 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 377 418 IPR001680 GO:0005515
Amo04g0276 992 SMART WD40_4 846 888 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0276 Amo-Chr4 4570663 4580464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0276 - - ahf:112741705 1945.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1401 14 23437994 23451079 Amo04g0276 04 4570663 4580464 hybridization