Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1329 ATGGCGGAGAAGTACAACATGAAGAACCCCGCCGTCAAGCGCATTCTCCAAGAGGTCAAGGAGATGCAGTCCAATCCTTCCGATGATTTCACGAGTCTCCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCAATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGCTGTCTATCATGGACGGATCCAATTGCCTTCAGAGTATCCATTCAAACCACCTTCATTTATGTTATTGACGCCTAATGGTCGTTTCGAGACCCAAACAAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACCGCTTTAGTTGCTCTGATTGCATTCATGCCTACCAACCCTAATGGTGCTTTGGGCTCGTTGGACTACAAGAAGGAAGAAAGGCGTACCTTGGCCATCAAATCTCGTGAAGCGCCTCCGAAATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATACACGAGTATATGCTAAGCAAGGCACCCCCTGTTCCTCAACATAGCTCCATACAACTACTTGAAGAAGAGCATTCCAGAGACGAGGAGGCTGAGTCCCAGGCAAATTCCCATAATCCTGAGGCTTTACCTGCTGAAGAGGGGATTCCAGATCAAGCAGGAGATAGAATTGTTGAAGAGGAGGTAGTTGTTGATGATAATCCTCAAGGAGTTGAACCTTCAACGGAGATCCAATCCAGTGTTTCAAGGAACCAGTCGCCCCATAATTCTGGTTTAAGGGTTCAAAATCTGAAGCCGGAGACTAGGATACAGCAAAAGCTTGATGATCATATTTTCACATTGATAGCCATTGGACTTGCCATTGCAATTGTGGCCCTTTTGCTGAAGAATCAATCTAACGCCACCTTCCCTCGCTATTATCATCACCAGGCTCACGCGCCCGAGACAAGTCAGCAACCACACCACCCATTTGGCGCTCACATTTTCCATGATGACACCCCTGGAGCTGAAGCAACCCACCACTACCAGGGTGTTGATGCTCCGGCACAATCGCCGTCGAGCCATGGCGGCGGTGGCCTTGACTCATCATCATTCTACTCTTCTTTCTCGGATCTCCTTAAAGGAACCTTACGCGGCCACACGTTAACAATGCCCGACGATATCACACACTTGTCAACCAAACACCACAACGAACTCAGACAAATATGCGGCCACACCGATTACCCTGACGTGTGCTTCTCCACCATCGCACCGCATCTCCACGGCGAGCACTTCGACCTCACCCACGTCCTCCAAGCTTCCATAACGGCCTGCTCGATCGAGTTGAAGCTGACCATAGAGAAGGCGAAGAGGCACTCGAGCACTTCGTCGCCGGAGAACTTAGGTGCAGTCATGTACGTGGACTGTAGGGTGCAGTATACCAACGCGCTTGAGAACCTCCAAAAAGCGAGTGATGCTGCTGCGGGGCGTGATCTTGGAACGGTTACCATCATGCTTAGTTCTGTTATGGCTGACGTGGCAACATGTGAGAGCGGGTTTCAGGATCTCGAGTCCTCTACCTTCGTTTCCGGGTCGGTTGGAATTATGGCAAGCAATTGTCTTGCCATTGCTCATATGGTTCCCCATCAGTAG 1620 0.492 MAEKYNMKNPAVKRILQEVKEMQSNPSDDFTSLPLEENIFEWQFAIRGPRDTEFEGAVYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQHSSIQLLEEEHSRDEEAESQANSHNPEALPAEEGIPDQAGDRIVEEEVVVDDNPQGVEPSTEIQSSVSRNQSPHNSGLRVQNLKPETRIQQKLDDHIFTLIAIGLAIAIVALLLKNQSNATFPRYYHHQAHAPETSQQPHHPFGAHIFHDDTPGAEATHHYQGVDAPAQSPSSHGGGGLDSSSFYSSFSDLLKGTLRGHTLTMPDDITHLSTKHHNELRQICGHTDYPDVCFSTIAPHLHGEHFDLTHVLQASITACSIELKLTIEKAKRHSSTSSPENLGAVMYVDCRVQYTNALENLQKASDAAAGRDLGTVTIMLSSVMADVATCESGFQDLESSTFVSGSVGIMASNCLAIAHMVPHQ* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1329 539 MobiDBLite consensus disorder prediction 226 260 - -
Amo14g1329 539 PANTHER BNAC01G21910D PROTEIN 6 295 - -
Amo14g1329 539 SUPERFAMILY UBC-like 11 133 IPR016135 -
Amo14g1329 539 Gene3D Ubiquitin Conjugating Enzyme 1 173 IPR016135 -
Amo14g1329 539 MobiDBLite consensus disorder prediction 184 214 - -
Amo14g1329 539 CDD UBCc 12 151 IPR000608 -
Amo14g1329 539 Pfam Plant invertase/pectin methylesterase inhibitor 395 532 IPR006501 GO:0004857
Amo14g1329 539 SMART ubc_7 13 173 - -
Amo14g1329 539 MobiDBLite consensus disorder prediction 234 260 - -
Amo14g1329 539 MobiDBLite consensus disorder prediction 308 355 - -
Amo14g1329 539 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Amo14g1329 539 CDD PMEI-like_2 393 536 - -
Amo14g1329 539 MobiDBLite consensus disorder prediction 184 198 - -
Amo14g1329 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 385 535 IPR006501 GO:0004857
Amo14g1329 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 393 537 IPR035513 -
Amo14g1329 539 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 295 - -
Amo14g1329 539 SMART PMEI_2 390 532 IPR006501 GO:0004857
Amo14g1329 539 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Amo14g1329 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 393 536 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1329 Amo-Chr14 21601431 21615711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1329 3 293 Miscellaneous Gene Families AT3G17000 61.486 1.09e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1329 K10578 - adu:107483429 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1329 14 21601431 21615711 Amo12g0169 12 2508886 2514335 PCT
Amo12g0169 12 2508886 2514335 Amo14g1329 14 21601431 21615711 PCT