Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0169 ATGACAGCAGGAGCATACAGCCTTCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATTTATCAACAAAAAGCTTTGGATATTAATGAGAGAGAATTAGGCCTGGATCATCCAGATACTATGAAGAGTTATGGGGATCTTGCAGTTTTCTATTATAGACTTCAACACACAGAGTTGGCTCTGAAGTATGTAAAGCGCGCTTTATATCTTTTGCACCTAACTTGTGGCCCATCTCATCCAAACACTGCTGCAACTTACATCAATGTCGCTATGATGGAAGAAGGTCTAGGAAATGTACACATTGCTCTTAGATATCTTCACAAAGCTTTGAAGTGCAACCAAAGATTACTTGGTCCAGATCATATTCAGACAGCTGCAAGTTATCATGCTATAGCAATAGCTCTCTCTTTAATGGAAGCATATCCATTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTTTGCGGGCAAAACTTGGCCCTGATGATTTGCGTACGCAGGATGCTGCCGCTTGGCTTGAGTATTTTGAATCCAAGGCATTTGAGCAGCAAGAAGCTGCTCGAAATGGTACACGGAAGCCTGATGCATCAATAGCTAGTAAAGGGCATCTAAGTGTGTCAGATCTACTTGACTACATTAATCCTAACCAAGATGCCAAAGGAAGAGATGTGGCAGCAAAGAGAAGAAGCCAGATACTAAAGGTGAGGGCCAAATCCTACCAGAGCACCGGATCTACGAGTTCTGATGAGTCTTCGAAGGAAACTCCAAAAGAGATTTCAGATGATGAGGTACATGAACCTGAACCTGAAGGTAGGGCAGATTCTGACCCGGGGAGCAACTCTGCATCTTATTCAGAACAGCCTATTTTAGAAAAGATCTCGGATGAAAAGCAGGATATTTCTGGTGAAGTTGTGTCTGAAGTGCATGGTGATGGGGAGGAAGGATGGCAACCAGTTCAAAGGCCAAGATCAGCTGGCTCATATGGTCGTCGTGTGAGGCAGAGACGTGCCACTCTTGGCAAAGTTTATAGTTATCAGAAGAAGAATGTGGAAGCTGGCACAGAATATCCTTTGGTAAGGAGTACTAATCAGAATAGCAGGTATTATTTCTTGAAGAAAAGAACAATTTCACATGGTGTTCATGCTGAAAATCATGCTGTGAATATCTCACAAGGCACTAAATTTGGAAGGAAAGTAGTCAAATCGGTTGCATACAGGGTTAAGTCTACGCCTGCGGCTTCCAAGACCTCCACAAATGTGACAGAAATTGTGGACAAGCCTTTGAGTTCTCATTCAGACTCTGGAACAAGTTCATCTGTGAATGATGCTAATCCGGGAAAGACTTCTCTAGTTAGCCTTGGAAAATCTCCTTCATACAAGGAAGTAGCCTTGGCTCCCCCGGGAACAATTTCCAAGTTCCAAGTCTATAATCCTCAAAGCGAGATTCCTGGTGGCGATGAACATGATCTCTGCAATGAACATGATCTTGGAAATCGTGATGCGGAGGACATTGAAGCCCATAGAAACACTGACTCAAACCTGGAAGAGGTGGATGATACACTTAAAGAGAAGCATGATGATTCACCAGCATATTGCGTAGATGGTTTACAAGATGATACTAAAGTTGCTGAGAAGAAAGAGGAAACCGAAATCATTGATTTTGTGCAAGATAATTGTGAGAATAATGAGGCTCTAGAATCTGGGGATGTAGAGGCTCAAGAAGCATCTGATAATAACATATTGGTTGGGGTAGTGGATGCTCCTGTAGACTCTCACAAACAAGAAACAGATGCAAGCAAATCATCAGGTGGTTTTGACTCGATCGATAATTCAACTCCTGTCTCCCAGGATAGTGAGAATATGAAGTTCAACACATCATCATCAAGTCCAACTCAGAGTCATGCTCAGGGCATTCCATATAAAAAATTATCTGCGTCTGCAGCTCCATTCAACCCATCACCTATCATGGCACGGGCTCCAACAATCGCAATGAATGCAACACTTCCTCCTAGTCCTGGTGCTGTTCCTACTATTGGCCCTTGGCCAGTGAACATGAATGTTCATCATGTTCCTCCAAGTCCTGCTACTGTGCTGCCTCCTCATCATGCATACCCTTCACCACCCCCAACACCAAACATGATGCAACCATTGCCATTTATGTATCCTCCGTATAGTCAACCTCAGTCAGTGCCAACCACCAACTTTCCAGTCACCACCGGTGCTTTTCATGCTAATCATTTTACTTGGCAGTGCAGTCTGAACCCTCCAAATGTATGTAAGTTTGGTCCTGGAGCCATTTGGCCTGTTTGTCAGCCTGTGGAATATCCTCTGCCAGCAGCTATCATTGAACCTCTCCAGGATCACATTTTGGAGCCACAGGTGCAGGGACATGTAACTGAAGTTTCAGGTGTAGTTCTGCCTGAGAGCATTGAAAACATTGGGGAATCCAATAAAGAAGTGAAAGGGTTGACTTCAGAGAGTAGTGAAAGTGAAGTGATTAGTGCTGTTTCGGAAGGTGTTAAAGAAAATGGTAATCCAAATTTTCCTCAAACTGAAAATGCTGGGAACAACCAAAGTCAAAGCATTGGAATAAATGATCATAGTAGCAGCAGTGAAATGAACATGGATGGTGAGAAGACATTCAGCATTTTACTTAGAGGACGAAGAAACCGGAAGCAGACTCTTAGAATGCCGATAAGTTTGCTTACTCGACCCCATGGCTCTCAGTCGTTCAAAGTTAATTATAACCGAATAGTTAGAGGAAGTGATGCTCCCAGGTCAATCAACATCTCTTCTAGTAAAGATTGTACAGCTACTGCTTAA 2835 0.43 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHIALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNQDAKGRDVAAKRRSQILKVRAKSYQSTGSTSSDESSKETPKEISDDEVHEPEPEGRADSDPGSNSASYSEQPILEKISDEKQDISGEVVSEVHGDGEEGWQPVQRPRSAGSYGRRVRQRRATLGKVYSYQKKNVEAGTEYPLVRSTNQNSRYYFLKKRTISHGVHAENHAVNISQGTKFGRKVVKSVAYRVKSTPAASKTSTNVTEIVDKPLSSHSDSGTSSSVNDANPGKTSLVSLGKSPSYKEVALAPPGTISKFQVYNPQSEIPGGDEHDLCNEHDLGNRDAEDIEAHRNTDSNLEEVDDTLKEKHDDSPAYCVDGLQDDTKVAEKKEETEIIDFVQDNCENNEALESGDVEAQEASDNNILVGVVDAPVDSHKQETDASKSSGGFDSIDNSTPVSQDSENMKFNTSSSSPTQSHAQGIPYKKLSASAAPFNPSPIMARAPTIAMNATLPPSPGAVPTIGPWPVNMNVHHVPPSPATVLPPHHAYPSPPPTPNMMQPLPFMYPPYSQPQSVPTTNFPVTTGAFHANHFTWQCSLNPPNVCKFGPGAIWPVCQPVEYPLPAAIIEPLQDHILEPQVQGHVTEVSGVVLPESIENIGESNKEVKGLTSESSESEVISAVSEGVKENGNPNFPQTENAGNNQSQSIGINDHSSSSEMNMDGEKTFSILLRGRRNRKQTLRMPISLLTRPHGSQSFKVNYNRIVRGSDAPRSINISSSKDCTATA* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0169 944 MobiDBLite consensus disorder prediction 239 254 - -
Amo12g0169 944 MobiDBLite consensus disorder prediction 239 288 - -
Amo12g0169 944 Pfam Tetratricopeptide repeat 2 72 - -
Amo12g0169 944 Pfam Tetratricopeptide repeat 86 160 - -
Amo12g0169 944 MobiDBLite consensus disorder prediction 312 335 - -
Amo12g0169 944 SUPERFAMILY TPR-like 3 118 IPR011990 GO:0005515
Amo12g0169 944 MobiDBLite consensus disorder prediction 255 277 - -
Amo12g0169 944 SMART tpr_5 45 78 IPR019734 GO:0005515
Amo12g0169 944 SMART tpr_5 3 36 IPR019734 GO:0005515
Amo12g0169 944 SMART tpr_5 87 120 IPR019734 GO:0005515
Amo12g0169 944 ProSiteProfiles TPR repeat profile. 3 36 IPR019734 GO:0005515
Amo12g0169 944 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 926 IPR027523 GO:0006996
Amo12g0169 944 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 926 - -
Amo12g0169 944 MobiDBLite consensus disorder prediction 604 642 - -
Amo12g0169 944 MobiDBLite consensus disorder prediction 842 880 - -
Amo12g0169 944 MobiDBLite consensus disorder prediction 595 642 - -
Amo12g0169 944 Gene3D Tetratricopeptide repeat domain 1 254 IPR011990 GO:0005515
Amo12g0169 944 MobiDBLite consensus disorder prediction 415 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0169 Amo-Chr12 2508886 2514335 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0169 K03255 - gmx:100808136 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0169 12 2508886 2514335 Amo12g0169 12 2508886 2514335 ECH
Amo14g1329 14 21601431 21615711 Amo12g0169 12 2508886 2514335 PCT
Amo12g0169 12 2508886 2514335 Amo14g1329 14 21601431 21615711 PCT