Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1275 GTAACTAATATATTCGATAAAATCATTTTTTCAGTAAATAAAACATACTCTTTGTTTAGAAACTTGAACAACTACAACTGCAACTGCAGCTTCTTGTTCCTCTTATCTTGTTCTAACACTTCTCCCAAAACCCACACTCATGATTCACAACACCCTTACACTCATTCACAACACCAATCACCATTTCTTCATCTCCGCAAATGGGTACCCTTCCTTTTCTTCTCTTTTCTACCATTTTCAATTCGAACCAAGCCCAGAAGAAAATCTACATCACTGGTTGTGAGTGCCCACAAGAAAGAGAATAAAGACGACAGCCATAGCTTTGTTTCCAACCCCAGCGAGTCCACTGGCTTCTTCCCAGAAGCAGTACTCCTTAAAAAAAAATCAATCCAGGAAGATGGCAAGGTTCTGCCGGAGTTCGAAGATGCTGAAGAAAGACAACTTTTTGAAGCGCTTATGCTTGAGCTGGATAGCGATACGAGTGTTGATCAAATGCGCCATTATGAGATTGTTTACTTGATTCATGAAAAGCACAACGAACAAGTTGCAGCTGTCAACGAGAAAATTCAAGACTTTTTGAGGGAAAAGAAAGGCACAGTGTGGAGATTTAGTGATTGGGGTATGAGAAGGCTGGCTTACAAAATAAAGAAAGCTAAAAATGCACACTACATTTTGATGAACTTTGAGTTGGACGCGAAATATATCAACGAGTTCAAGACAATGTTGGACCAAGATGAAAGAGTTATTAGGCATCTTGTGATCAAGAGGGACGAGGCGATCACTGAAGATTGTCCTCCTCCTCCCGAGTTCCATACTCTGCGCGCCGGTGCAGATGATGATTATGATGATGAAGGATATGAAACAGAATATGATGAGGATTTCGATGATGATTGGGATGGTGAAGATGATGATGATGGCGAAATTATCATTGTGGATGATGATGATGATTATGATGATGATGATGGTAGAGATCATAGAAATGATACATCAGCAAATATGATTCAGCCAGATAGAAAATTGAGGGCTGGGAACGTAGCTAGGTAG 1044 0.4013 VTNIFDKIIFSVNKTYSLFRNLNNYNCNCSFLFLLSCSNTSPKTHTHDSQHPYTHSQHQSPFLHLRKWVPFLFFSFLPFSIRTKPRRKSTSLVVSAHKKENKDDSHSFVSNPSESTGFFPEAVLLKKKSIQEDGKVLPEFEDAEERQLFEALMLELDSDTSVDQMRHYEIVYLIHEKHNEQVAAVNEKIQDFLREKKGTVWRFSDWGMRRLAYKIKKAKNAHYILMNFELDAKYINEFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRAGADDDYDDEGYETEYDEDFDDDWDGEDDDDGEIIIVDDDDDYDDDDGRDHRNDTSANMIQPDRKLRAGNVAR* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1275 347 Hamap 30S ribosomal protein S6 [rpsF]. 165 258 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 128 279 - -
Amo14g1275 347 TIGRFAM S6: ribosomal protein bS6 165 257 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 MobiDBLite consensus disorder prediction 280 321 - -
Amo14g1275 347 CDD bS6 167 256 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 MobiDBLite consensus disorder prediction 260 347 - -
Amo14g1275 347 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 128 279 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 Pfam Ribosomal protein S6 167 255 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 SUPERFAMILY Ribosomal protein S6 165 265 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 Gene3D - 160 263 IPR014717 -
Amo14g1275 347 ProSitePatterns Ribosomal protein S6 signature. 207 216 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo14g1275 347 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1275 Amo-Chr14 20638829 20642069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1275 - - aip:107608729 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1275 14 20638829 20642069 Amo14g1275 14 20638829 20642069 ECH
Amo14g1275 14 20638829 20642069 Amo04g0113 04 1952838 1955936 hybridization