Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0113 ATGATTCACAACACCCTTACACTCATTCACAACACCAATCACCATTTCTTCATCTCCGCGAATGGGTACCCTTCCTTTTCTTCCTCTTTCCTACCATTTTCAATTCGAACCAAGCCCAGAAGAAAATCAGCATCACTGGTTGTGAGTGCCCACAAGAAAGACAACAAAGAAGACAGCCATAGCTTTGTTTCCAACCCAAACGAGTCCACTGGCTTCTTCCCAGAAGCAGTACTCCTTAAAAAAAAATKAATCCAGGAAGATGGCAAGGTTCTGCCGGAGTTCGAAGATGCTGAAGAAAGACAACTTTTTGAAGCGCTTATACTTGAGCTGGATAGCGATACGAGTGTTGATCAAATGCGCCATTATGAGATTGTTTACTTGATTCATGAAAAGCACAAGGAACAAGTTGCAGCTGTCAACGAGAAAATTCAAGACTTTTTGAGGGAAAAGAAAGGCACAGTGTGGAGATTTAGTGATTGGGGTATGAGAAGGCTGGCTTACAAAATAAAGAAAGCTAAAAATGCACACTACATTTTGATGAACTTTGAGTTGGACGCGAAATATATCAACGAGTTCAAGACAATGTTGGACCAAGATGAGAGAGTTATTAGGCATCTTGTGATCAAGAGGGACGAGGCGATCACCGAAGATTGTCCTCCTCCTCCCGAGTTTCATACTCTGCGCGCCGGTGCAGATGATGATTATGACGATGAAGGATATGAAACAGAATATGATGAGGATTTCGATGATGATTGGGATGGTGAAGATGATGATGATGGCGAAATTATCATTGTGGATGATGATGATGATTATGATGATGATGATGGTAGAGATCATAGAAATGATACATCAGCAAATATGATACAGCCAGATAGAAAATTGAGGGCTGGGAACGTAGCTAGGTAG 906 0.415 MIHNTLTLIHNTNHHFFISANGYPSFSSSFLPFSIRTKPRRKSASLVVSAHKKDNKEDSHSFVSNPNESTGFFPEAVLLKKKXIQEDGKVLPEFEDAEERQLFEALILELDSDTSVDQMRHYEIVYLIHEKHKEQVAAVNEKIQDFLREKKGTVWRFSDWGMRRLAYKIKKAKNAHYILMNFELDAKYINEFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRAGADDDYDDEGYETEYDEDFDDDWDGEDDDDGEIIIVDDDDDYDDDDGRDHRNDTSANMIQPDRKLRAGNVAR* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0113 301 CDD bS6 121 210 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 MobiDBLite consensus disorder prediction 214 301 - -
Amo04g0113 301 Gene3D - 114 217 IPR014717 -
Amo04g0113 301 MobiDBLite consensus disorder prediction 234 275 - -
Amo04g0113 301 Pfam Ribosomal protein S6 121 209 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 TIGRFAM S6: ribosomal protein bS6 119 211 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 ProSitePatterns Ribosomal protein S6 signature. 161 170 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 82 233 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 SUPERFAMILY Ribosomal protein S6 119 219 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 Hamap 30S ribosomal protein S6 [rpsF]. 119 212 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Amo04g0113 301 Coils Coil 129 149 - -
Amo04g0113 301 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 82 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0113 Amo-Chr4 1952838 1955936 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0113 - - aip:107608729 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1275 14 20638829 20642069 Amo04g0113 04 1952838 1955936 hybridization