Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5579 ATGGAAGTGGTGCCGTACCAGCTTTCTCGGTTGCCTTACCAGGATTCCCTCAAACTGCTTGAGGCTGATATACAGCACGCCAATGCTTTGGCTGCTGCAATTCCAAGAGCCAAAGGTGGGACTCTTCTCCAAATGAAATTGGTTTACAATCACTTGGCTCCTCTCCTTCTGTTGTTCTTGCAATGGATGGATTGTTCTTGRACATGCTTTCTACACAGTTATCTCAACTTGTTCCACATACTTGTGTACAAAGTTCATAATGATGGTAGATCAAGCATAACTTCTCATGCAAGGAAGGCAACCATAAGAGACTTTTATGCCGTTATTCTGCCGTCTCTCCAGCGGCTCCATGGAAGCTTGGATAAGTTGGAGATTTGTAAGGAAGGACACTCTTGCAACAATGGCAACAAGATTATTGAAGGTGATAGGAAACTGATCAATGTTGATTTGGAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCATGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACACGCGGTCCGAGTCATGCCCGTTTTGCCGCGGCAGCTTAAGGAGAGTTAACTCTGAGGATCTATGGGTTCTGACCTGCAATGAGGATGTTGTTGATGCTGAAACTGTTTCAAAAGAGGACTTGCTGCGCTTCCATCTTTATATCAATAGCCTACCTAAAGATTACCCTGATGCACTATTTTTAATGTATTATGAATACTTAATTTGA 759 0.4282 MEVVPYQLSRLPYQDSLKLLEADIQHANALAAAIPRAKGGTLLQMKLVYNHLAPLLLLFLQWMDCSXTCFLHSYLNLFHILVYKVHNDGRSSITSHARKATIRDFYAVILPSLQRLHGSLDKLEICKEGHSCNNGNKIIEGDRKLINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLLRFHLYINSLPKDYPDALFLMYYEYLI* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5579 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 205 IPR013083 -
Amo13g5579 252 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Amo13g5579 252 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Amo13g5579 252 Pfam Ring finger domain 154 194 IPR001841 -
Amo13g5579 252 PANTHER RING FINGER PROTEIN 41, 151 6 252 - -
Amo13g5579 252 SUPERFAMILY RING/U-box 146 198 - -
Amo13g5579 252 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 252 - -
Amo13g5579 252 SMART ring_2 156 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5579 Amo-Chr13 157511221 157513598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5579 - - gmx:100790422 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g0548 10 5945769 5947226 Amo13g5579 13 157511221 157513598 PCT
Amo13g5579 13 157511221 157513598 Amo10g0548 10 5945769 5947226 PCT