Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0548 AACTTAGTTATCAATTTTCTGAATTTTGGATTGTGGGTTTGTGTGTTTTTTCTTAGGGCTGCAGCAATTCCARGAACAGAAGGTGGAACTGTTCTTCAAATGAAATTGGTTTATAATCACTTGGCTCCTTTRGTTCTCTTGTTTCTACAGTGGATGGATTGTTCCTGTGCTAGCTTTCTACAYAGATATCTCAATCTCTTCCACATAGTTATATACAAGGTACACAATGATGGTAGAAACATGTCTAGTCATGGAAGGAAAGCTACCATAGGGGACTTTTATGCTGTTATATTGCCATCTCTCCAGCGGCTTCAYGGTAGCTTGGAGAAGTTGGAGACTTCGAAAGAAGGCCAATCATYGAGCATGGAACATTCAAGTTATGGCAAGAAGATGATTGTTGAAGGTGATGGGAAACTAACCAATGTTGACTTGCAAAGAGAGGATGAATGTGATATTTGCTTAGAGCCTTGCACCAAAATGGTCCTGCCTAATTGTTGCCATGCCATGTGTATCCGGTGCTACCGCAAGTGGAACACCCGGTCGCAGTCTTGCCCTTTTTGCCGCGGCAGCTTGAGGAGGGTTAACTCTGAGGATCTTTGGGTGCTAACTTGCAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAAGGAAGACTTGTGGCGTTTCTACCTTTATATCAATAAGCTACCAAAACATCACCCGGAAGCACTTTTTGTAATGTACTATGAATATCTCATTTGA 741 0.4116 NLVINFLNFGLWVCVFFLRAAAIPXTEGGTVLQMKLVYNHLAPLVLLFLQWMDCSCASFLHRYLNLFHIVIYKVHNDGRNMSSHGRKATIGDFYAVILPSLQRLHGSLEKLETSKEGQSXSMEHSSYGKKMIVEGDGKLTNVDLQREDECDICLEPCTKMVLPNCCHAMCIRCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLWRFYLYINKLPKHHPEALFVMYYEYLI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0548 246 Pfam Ring finger domain 148 188 IPR001841 -
Amo10g0548 246 SUPERFAMILY RING/U-box 141 192 - -
Amo10g0548 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 199 IPR013083 -
Amo10g0548 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 246 - -
Amo10g0548 246 PANTHER RING FINGER PROTEIN 41, 151 20 246 - -
Amo10g0548 246 SMART ring_2 150 187 IPR001841 -
Amo10g0548 246 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Amo10g0548 246 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0548 Amo-Chr10 5945769 5947226 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0548 - - aprc:113850330 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g0548 10 5945769 5947226 Amo13g5579 13 157511221 157513598 PCT
Amo13g5579 13 157511221 157513598 Amo10g0548 10 5945769 5947226 PCT