Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5120 ATGGGAAGGAGAAGATGCTCCACCTTTTTGGTGTTGTTATTGACACTCCAAGTGGTGAAGGCTCTGACGGAGGAGGTTCCACTAAGCACGAATTCACGGTGGATAGTAAACCAACAAGGGAAGAGGGTGAAGCTTGCGTGCGTCAATTGGGTGTCCCATCTAGAACCCGTGGTGGCGGAGGGGCTTAGCAAGAAGCCCGTGGATGTGATCTCGAAGGGGATAAAGTCCATGGGCTTCAACTGTGTGAGGCTCACTTGGCCCATTCTATTGGTCACCAATGACTCCCTCGCTTCTCTAACCGTTAGACAATCATTTCAGAGCCTTGGCCTAACTGATTCCGTTGCTGGCATCCAAGCCAATAACCCCTCCATCATCGATCTCAATCTCATCCAAGCTTTTCAGGCAGTGGTGAAGAGTCTCGGGGACAACGATGTGATGGTGATCTTGGACAACCACATAACCGAACCAGGTTGGTGCTGCAATAACAACGATGGCAATGGCTTCTTCGGCGATAAATATTTCAACCCAGACCTCTGGATCCAAGGCCTCACCAAGATGGCCACTATTTTCAACGGAGTCACCAACGTTGTAGGCATGAGCTTAAGAAACGAGCTTCGTGGCCCCAGACAGAATGTCAACGATTGGTATATGGTGAAAGGAGCGGAATCGGTTCATGCAGCGAACCCAAATGTGATTGTAATCTTGTCCGGCTTAAGTTTTGACAAGGACTTATCGTTCGTTAGGAATAGAGCAGTGCAAGTGTCCTTTAAGGGGAAACTAGTTTTTGAGGCGCACTGGTATGCCTTCACGGATGGTCAAGCTTGGGTTCAAGGGAACCCCAACCAAGTGTGTGGACAAGTGTCTGCAAACGTCATCACCAATTCTGCTTTCTTGCTGGACCAAGGATGGCCCTTGTTTTTCAGCGAGTTTGGGTTGGACTTGAGAGGCACCAATCTTAATGATAATAGGTACATCACCTGCTTCATGGCTCTCGCGGCTGACCTGGACTTCGATTGGGCCTATTGGACTCTTGTTGGCAGTTACTATTTTAGACAAGGCGTTGCTGGAATGGAAGAGTTTTATGGGCTTCTTACTTGGGACTGGGCCAATGTTAGAAATACTACGTTCTTGCAAAGGATCTCTTCCCTACAACTTCCCTTCCGAGGACCAGGCATAACACAAGGTAATCCATACAAAGTGATTTACCATCCTTTGACGGGGCTTTGTGTGACAAGGAAGTCAATACAAGACCCATTGAGGTTGGGCCCTTGTTCTAACTCTGATGGTTGGAAGTATACGCCTCAAAAGATACTAAACGTAATGGGAACTTACTATTGCTTACAAGCGGATCAAGAAGGAAATCCTGCAAAACTTAGCATAATTTGCTCTGCTTCTAACTCTAAATGGGAAATGATCTCAGACTCAAAGTTGCACCTCTCCTCTAACCTCACCGATGGTTCTAAGGTTTGTTTGGATATAGATTCCAACAATAATATTGTGACCAATGCCTGCAAATGCTTGAGCACAGATCATACTTGTGACCCTGGAAGCCAATGGTTCAAACTTGTTGACACTGGAAGAACATACCAACTACAAGAAAGCCATAAAATAAAGGTGATCGATACTGGCGAGCCTTTATCTGAAATCTCAGATTCTCCATGGTTACTTTATAGAGGAGTTAAACCCCAAAACAAGCAAGCATCAGATGACAGTACAATGACCAAACAAATTCGTGCCACTCATGCTCCTGTTGATGATGAACGCATTGATGTTAGGCCTCTTCTTAATGTGGTTCAACACATTTTCAACTCTGCTGCTTCTATCATCCCTGGCATTGTTCAGATATCTTGCAAGTGTTTGAGTGGTGGAGATGCACATGCCACAACCATGGGGATACTAAGCATGCTGTCAAGGTATTCATGGGAGGCCAAGGTGGTGATAGCATTGGCAGCATTCGGGACCAACTTTGGCAAGTTCTGGCTTCTGGCTCAGGTTCATGCCACCAACCCTCTTGCCAGGTCTGTTGCAATGTTGAAGCACATCCATGAAACGCTGGAACAAGTGAATGAATTGGGACCCAAGTTTGAAGCAATCAGCCACCTTCTCAAGGCCATGTTGGATGTAACCAACTACATTATGCAGTTCCATGAGCTTCCCTCTCAGTACATTGACCCTGAAGCACCAGAGACACTAGCTGCCTCCAATCTTATTCCAAGTGCTGTCTATTGGACCATTCGGAGTATCATCGCCTGCGCAACACAGATTCTAGGCATCATTGGCCTCAGTCAAGGATTCATGTCATCAACAATAGAGACTTGGGAACTTTCAAGTTTGGCTCATAAGCTCAGTAACATAAACAGCCACCTTCTTAAGCAACTTGACCTCTGTCGTCAACATTTAGATGATAACAAACAACGAGAAGCATTTGAAACACTTCAGATCCTTTTTCAGACATCCCACCCTGACAACATGAAGATTCTCAAAGCCTTGATTTACAACAAGGATGATATGTTGCCATTGTTTGATGGCTCTACCAAACAACGGGTTAGCATTGAGGTGCTGCGGAAGAAAATTGTGTTACTCTACATAACAGACCTCCATCATATTTCTGATCAAGAAATCATGATCATTGACCAAATGTATCAAGAATCACGCCAGGAATCGAGCAGGTTTGAGAGCCAATACGAATTAGTTTGGATCCCAATTGTGGACAAGGGAACCCCATGGACAGAAGAGAAACAAAACAAGTTTGTGAAGCTGCAATCTATGATGACTTGGTACTCACTCTACGACCCTTCCATGTTGGAGCCAGCAACCATCAGGTACATAAAAGAGGTGTGGCTTTTCAATAATGCCAAGCCAATAATTGTAGTTCTGGATCAGCAAGGAAAGGTTGTTAACCTGAATGCAATACACATGATGTGGATTTGGGGAAGCTTGGCTTATCCTTTCTCCAGTTCAAGGGAGGAAGCATTGTGGAAGCAAGAATCATGGCGGCTTGAACTGTTGGCAGATACAATTCATCCATCTCTCTATGATTGGATAGCACAAGGCACATACATATGCTTGTATGGAGGGGACGACATAGAGTGGATTCGGAAGTTCACAAGGAAGGCACGATCACTGGCAGAAACTCTCAAGTTACCACTGGAGATGATCTATGTAGGGAGAAGCAACCCAGGAGAAAAGGTTCGAAAAATCAACACGGTCATTGAAGAAGAAAAGTTAAGCAACACACTCCCTGACCCTGGGCTTACCCTTATATGGTTCTTCTGGGTTAGGCTGGAGAGCATGTGGCACTCAAAACTGCAGCAGGAAAAGAAAGTTGAAAATGATGAGATAATGCATGAGATAATGAGGATTCTAGGCTTTGACAGCAGTGAGCAAGGGTGGGTTGTTATGAGCAGAGGCACAGAGACTATGATGGCAAAGGGAAAGGGAGACACATTCCTGAATTGCCTCAATGACTATGATCAATGGAAGGACAAGGCAGAGGAGAAAGGGGTTTTGCCTGCAATGGATGATTATATTCAAGGATTACAAACCCCACATCATTGTAACCGCTTGATACTGCCGGGAACCAATGGCAGAATCCCAGATAAGGTGGTTTGTGTCGAATGCGGCCGTCCCATGGAAAAGTTCTACATGTATCGCTGCTGCACAGACTGA 3669 0.4535 MGRRRCSTFLVLLLTLQVVKALTEEVPLSTNSRWIVNQQGKRVKLACVNWVSHLEPVVAEGLSKKPVDVISKGIKSMGFNCVRLTWPILLVTNDSLASLTVRQSFQSLGLTDSVAGIQANNPSIIDLNLIQAFQAVVKSLGDNDVMVILDNHITEPGWCCNNNDGNGFFGDKYFNPDLWIQGLTKMATIFNGVTNVVGMSLRNELRGPRQNVNDWYMVKGAESVHAANPNVIVILSGLSFDKDLSFVRNRAVQVSFKGKLVFEAHWYAFTDGQAWVQGNPNQVCGQVSANVITNSAFLLDQGWPLFFSEFGLDLRGTNLNDNRYITCFMALAADLDFDWAYWTLVGSYYFRQGVAGMEEFYGLLTWDWANVRNTTFLQRISSLQLPFRGPGITQGNPYKVIYHPLTGLCVTRKSIQDPLRLGPCSNSDGWKYTPQKILNVMGTYYCLQADQEGNPAKLSIICSASNSKWEMISDSKLHLSSNLTDGSKVCLDIDSNNNIVTNACKCLSTDHTCDPGSQWFKLVDTGRTYQLQESHKIKVIDTGEPLSEISDSPWLLYRGVKPQNKQASDDSTMTKQIRATHAPVDDERIDVRPLLNVVQHIFNSAASIIPGIVQISCKCLSGGDAHATTMGILSMLSRYSWEAKVVIALAAFGTNFGKFWLLAQVHATNPLARSVAMLKHIHETLEQVNELGPKFEAISHLLKAMLDVTNYIMQFHELPSQYIDPEAPETLAASNLIPSAVYWTIRSIIACATQILGIIGLSQGFMSSTIETWELSSLAHKLSNINSHLLKQLDLCRQHLDDNKQREAFETLQILFQTSHPDNMKILKALIYNKDDMLPLFDGSTKQRVSIEVLRKKIVLLYITDLHHISDQEIMIIDQMYQESRQESSRFESQYELVWIPIVDKGTPWTEEKQNKFVKLQSMMTWYSLYDPSMLEPATIRYIKEVWLFNNAKPIIVVLDQQGKVVNLNAIHMMWIWGSLAYPFSSSREEALWKQESWRLELLADTIHPSLYDWIAQGTYICLYGGDDIEWIRKFTRKARSLAETLKLPLEMIYVGRSNPGEKVRKINTVIEEEKLSNTLPDPGLTLIWFFWVRLESMWHSKLQQEKKVENDEIMHEIMRILGFDSSEQGWVVMSRGTETMMAKGKGDTFLNCLNDYDQWKDKAEEKGVLPAMDDYIQGLQTPHHCNRLILPGTNGRIPDKVVCVECGRPMEKFYMYRCCTD* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5120 1222 Gene3D Glycosidases 25 384 - -
Amo13g5120 1222 PANTHER SIEVE ELEMENT OCCLUSION-RELATED 566 614 - -
Amo13g5120 1222 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 613 1221 IPR039299 GO:0010088
Amo13g5120 1222 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 566 614 IPR039299 GO:0010088
Amo13g5120 1222 Pfam Sieve element occlusion N-terminus 613 820 IPR027942 -
Amo13g5120 1222 Pfam Sieve element occlusion N-terminus 568 611 IPR027942 -
Amo13g5120 1222 SUPERFAMILY (Trans)glycosidases 27 375 IPR017853 -
Amo13g5120 1222 CDD RICIN 398 504 IPR000772 -
Amo13g5120 1222 Pfam Cellulase (glycosyl hydrolase family 5) 68 344 IPR001547 GO:0004553|GO:0071704
Amo13g5120 1222 Pfam Sieve element occlusion C-terminus 987 1221 IPR027944 -
Amo13g5120 1222 PANTHER SIEVE ELEMENT OCCLUSION-RELATED 613 1221 - -
Amo13g5120 1222 SUPERFAMILY Ricin B-like lectins 394 522 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5120 Amo-Chr13 150775796 150781586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5120 27 536 Glycoside Hydrolase AT1G13130 58.915 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5120 - - gmx:100799626 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5120 13 150775796 150781586 Amo13g5120 13 150775796 150781586 ECH
Amo13g5120 13 150775796 150781586 Amo10g0603 10 6840607 6844697 PCT