Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5115 ATGGAAGAACACAAAGCATGCAGCAGTGAGCTTGCAGGTGTTAATATAATTTCAAGCTGGTGCTTCCTAATCGGCTTGGTGGTGACGCTGAAGTACTTGATCTCCCTTTCCAAATGGATCTTCGCCACCTTTCTCCGACCCGAAATAGACCTAATAGGAACCTACGGTTCCTGGGCCATGGTCACCGGAGCAACCGACGGAATCGGAAAAGCCATGGCTCACCGCTTAGCACACCGAGGACTCAACATCATCCTCGTCAGCAGATCCTCCAAGAGGCTCCAAACCGTCGCAACTGAACTCCAAGCACGCCACCCTCACATCCTCGTCAAGGCCATCCAGATGGACTTCTCCGGCGACATAGCGGAGGGTCTCCGGCAAATAGCGGCGGCCACACGCGAATTGGACCTCGGGATACTGATCAACAACGTGGGGATCACGTACCCTGGGGCTATGTTCTTTGACCAAGTGGAAGAGAAGGTGTGGAGGAAGATCTTAAAGGTGAATGTGGAAGGAACGACGAGGGTGACAAGAGCGGTGGTGCCCGGAATGATGGAGCGGAGAAGGGGTGCAATTATTAACATTGGATCTGGCGCTTCCGTCGTCATTCCTTCGCATCCTCTCTATTCCATCTATGCTGCTTCAAAGGCTTACGTGGATCAGCTATCAAGATCTCTGTACGTACCACTGTATGTAGCAACGAAGATGGCATCAGAGATAGCATGTATAGAGAAAGATTCACTTTTCATTCCAACACCAGAGGCTTATGCAAAAGCGGCCGTTCGTAAAATTGGGCATGGGCCAAGGTGCACTCCTTATTGGGCTCACTCTATTCAGTGGTTCTTTGCAGGCTTAGCCCCGGACCCACTTCTCGATGCTTGGCGCTTTTCTATAGCAATGCGACGCTGGAAAGGAATCAAATACTAA 924 0.5097 MEEHKACSSELAGVNIISSWCFLIGLVVTLKYLISLSKWIFATFLRPEIDLIGTYGSWAMVTGATDGIGKAMAHRLAHRGLNIILVSRSSKRLQTVATELQARHPHILVKAIQMDFSGDIAEGLRQIAAATRELDLGILINNVGITYPGAMFFDQVEEKVWRKILKVNVEGTTRVTRAVVPGMMERRRGAIINIGSGASVVIPSHPLYSIYAASKAYVDQLSRSLYVPLYVATKMASEIACIEKDSLFIPTPEAYAKAAVRKIGHGPRCTPYWAHSIQWFFAGLAPDPLLDAWRFSIAMRRWKGIKY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5115 307 PIRSF 11-beta-HSD1 7 306 - -
Amo13g5115 307 Pfam short chain dehydrogenase 58 228 IPR002347 -
Amo13g5115 307 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 22 302 - -
Amo13g5115 307 PRINTS Glucose/ribitol dehydrogenase family signature 134 145 IPR002347 -
Amo13g5115 307 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Amo13g5115 307 PRINTS Glucose/ribitol dehydrogenase family signature 183 199 IPR002347 -
Amo13g5115 307 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Amo13g5115 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 145 IPR002347 -
Amo13g5115 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Amo13g5115 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 197 IPR002347 -
Amo13g5115 307 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 298 IPR036291 -
Amo13g5115 307 CDD 17beta-HSD1_like_SDR_c 56 286 - -
Amo13g5115 307 Gene3D - 53 272 - -
Amo13g5115 307 PANTHER RH59310P 22 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5115 Amo-Chr13 150686260 150693485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5115 21 301 Lipid Metabolism Gene Families AT1G24470 56.271 3.44e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5115 K10251 - mnt:21410235 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5115 13 150686260 150693485 Amo20g0969 20 16796609 16799878 PCT
Amo13g5115 13 150686260 150693485 Amo10g0559 10 6081328 6084106 PCT