Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0559 ATGGAGTGCTGCATACTTAACCGCCTTAAAACCCAACCGCTCTGGTTCGCACTCCTTTTCGGCCTAGGCGCCCTCACCCTCCTCCGATTCCTCTTCCTCTTCCTCAGATGGGCCTACGTCAACTTCCTCAGGCCCGCTAAGAATCTCAAGAAATACGGATCCTGGGCCCTAGTAACCGGCCCAACCGACGGAATCGGAAAAGCCTTCGCCTTCCAGCTGGCACGTAACGGCCTCAACCTCGTCCTTGTCGGCCGAAGCCCTGACAAGCTCGCTGATGTCTCCGCCGCTCTCACCGCCAAGTTCCCCAAAATCGATGTCAGAACCGTCGTCGTCGACTTCGCCGGCGATCTCGACGACGGCATGAGGAGGATCCAAGATGCAATTGAAGGATTGGACGTTGGTGTTCTTATCAACAACGTTGGGGTTTCTTACCCTTACGCTAGATTCTTCCACGAAGTGGATGAGGGGCTTTTGAGGAATTTGATTAGGGTTAACATTGAAGGAACCACTAAGGTCACGCAGACGGTTATTCCTGGCATGCTGAAGAGGAAGAAGGGCGCCATTGTTAACATTGGTTCTGGTGCCGCCATTGTTATACCTTCGGATCCACTTTACGCTGTTTACGCTGCTTCCAAAGCGTACGTTGATCAATTTTCCAGATCTTTGTATGTGGAGTACAAGAAGAGTGGCATTGATGTTCAGTGTCAGGTTCCATTATATGTGGCAACAAAGATGGCATCAATTAGAAGATCTTCATTCTTCGTCCCATCAACTGATGGATATGCCAAAGCTGGTGTGAGATGGATAGGCTATGAACCTCGCTGCACACCATACTGGCCTCACACCATTCTCTGGGCCTTAGCATACTCATTGCCTGAGTCCATTGTTGATGCTTGGCGCCTGCGGTTTTGCCTCGGAATCCGAAAGAGGGGACAACAGAAAGATTCACAAAAGAAGGAATAG 963 0.5057 MECCILNRLKTQPLWFALLFGLGALTLLRFLFLFLRWAYVNFLRPAKNLKKYGSWALVTGPTDGIGKAFAFQLARNGLNLVLVGRSPDKLADVSAALTAKFPKIDVRTVVVDFAGDLDDGMRRIQDAIEGLDVGVLINNVGVSYPYARFFHEVDEGLLRNLIRVNIEGTTKVTQTVIPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAASKAYVDQFSRSLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYAKAGVRWIGYEPRCTPYWPHTILWALAYSLPESIVDAWRLRFCLGIRKRGQQKDSQKKE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0559 320 PIRSF 11-beta-HSD1 4 314 - -
Amo10g0559 320 PANTHER RH59310P 4 319 - -
Amo10g0559 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Amo10g0559 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Amo10g0559 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Amo10g0559 320 Gene3D - 48 266 - -
Amo10g0559 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 310 IPR036291 -
Amo10g0559 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Amo10g0559 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Amo10g0559 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Amo10g0559 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Amo10g0559 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Amo10g0559 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Amo10g0559 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Amo10g0559 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 4 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0559 Amo-Chr10 6081328 6084106 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0559 1 320 Lipid Metabolism Gene Families AT1G67730 62.813 2.33e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0559 K10251 - jre:108990665 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0969 20 16796609 16799878 Amo10g0559 10 6081328 6084106 hybridization
Amo13g5115 13 150686260 150693485 Amo10g0559 10 6081328 6084106 PCT