Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3623 ATGGCATCAACAGCGACTGGGTGGTACAGAGGAAGGGTCAAAGCTGTTCCTTCTGGGGATTGTTTGGTCATTGTGGCCCTCACTAGCTCAAGGCCTGGTGCTCTTCCTGAAAAGACCATCACTTTATCATCTTTAGTTGCTCCTAGGCTGGCAAGAAGGGGTGGTGTGGATGAACCATATGCTTGGGAAAGTAGAGAATTTCTAAGGAAGCTCTGCGTTGGGAAGGAGGTGACCTTCAAGATTGATTACAATGTGCCCTCCATAAATCGTGAGTTTGCAAGTGTTTTTCTTGGGGACAAGAATGTTGCAATGCTGGTTGTTGCTGCAGGATGGGCAAAGATTAGAGAGCAGGGGCAACAGAAAGGAGAAGCAAGCCCTTACCTTGCAGAATTGTTAAGATTGGAAGAACAAGCTAAACAGGAAGGTGTTGGTCGTTGGAACAAGAGTCCAGGTGCTGCTGAGGCCTCCATCAGAAATCTACCACCTTCAGCCATTGGTGATCCAAGCAACTTGGATGCTATGGGTTTGTTGGCTGCAAACAAAGGCAAGCCAATGGAAGGAATTGTTGAACAGGTTCGCGATGGCAGTACCCTGCGAGTCTATCTGCTCCCTGAATTTCAGTTTGTCCAAGTTTTCGTTGCTGGAATTCAGTCCCCACAAATGGGAAGGAAAGCTGCATCAGAGCCTGTTGTTGAGTCAGAGGTGACAGCAGATAGAACCGATAGTGGAGATGTTCCTGCTGAGTCTCGAGCCCCACTTACATCTGCCCAAAGGCTTGCAGTTTCAGCTGCTGTTGCTGAAAGTGTTGCTGATCCTTTTGCTCATGAGGCTAAATTTTTCACCGAGATGAGAGTGTTGAACCGAGATGTGCGGGTTGTCCTTGAAGGTGTTGATAAGTTCAGCAATTTGATTGGGTCAGTGTATTATCCTGATGGTGAATCAGCAAAAGACCTGGCGTTGGAACTTGTTGAAAATGGTTTCGCCAAATATGTTGAATGGAGTGCAAATATGATGGAGGATGAGGCAAAGAGGAAGCTGAAGGCTGCAGAGCTTCAGGCTAAGAAAAGCAGATTGAGGATGTGGACAAACTATGTACCACCAGCAACTAATTCCAAGGCAATTCATGACCAGAATTTTACAGGAAAGGTGGTTGAGGTTGTAAGTGGGGACTGCATCATTGTTGCAGATGATTCCATTCCTTATGGCAGTCCACTAGCAGAGAGACGAATTAACCTGTCAAGTATTCGATGTCCCAAAATGGGCAATCCTCGTAGAGATGAAAAACCAGCTCCCTATGCTCGTGAAGCAAAGGAGTTCTTGAGAACACGCCTCATTGGCCGTCAAGTTAATGTACAAATGGAGTATTCTAGAAAGGTTAGTCCAGCAGATGGGTCTGCAGCTCCACCTGGAGCTGCTGATGCTAGATCAATGGATTTTGGATCAGTTTTCCTAGTATCAAATGTTAAGAGTGAGGGTGATGGTGTTCCTGCTGGTAGCCAGCAACCCGGGGTCAATGTCGCTGAGTTGGTAGTTGCTCGAGGATTTGGAACTGTCATTAGACATCGGGACTTTGATGAGAGATCAAACTACTATGATGCTCTTCTTGCTGCAGAATCACGTGCCATATCTGGCAAAAAAGGGATCCATTCTGCCAAGGACTCTCCGGTCATGCATATAACTGATCTGACCATTGCATCAGCCAAGAAAGCCAAAGATTTCTTGCCTTTCCTGCACCGGAGTAGAAGAATCCCAGCTGTTGTGGAATATGTCCTCAGCGGCCATCGTTTTAAATTGTTAATTCCAAAAGAAACTTGCAGCATTGCTTTTGCATTCTCTGGTGTTAGATGTCCTGGTCGTGATGAGCCATATTCTGAGGAAGCAATTGCACTGATGAGGCGAAAGATTATGCAGAGAGATGTTGAGATTGAAGTGGAAACTGTTGATAGAACTGGAACGTTCTTGGGATCCTTATGGGAGTCAAGGACAAATGTAGCAGTTACACTCCTTGAAGCTGGTCTTGCAAAACTTCAAACATCCTTTGGCAGTGACAGAATTCCTGATTTACACCTTCTGGAGCAAGCTGAACAATCTGCAAAGAGGCAAAAGCTGAAAATATGGGAGAATTATGTCGAAGGGGAGGAAGTCTCTAATGGTGCAACTGTTGAAAACAAACAGCAAGAAGTTCTTAAGGTTGTGGTTACAGAAGTTTTGGGTGGTGGTAAATTCTATGTTCAGCCCGCTGGAGATCAGAAGATAGCATCCATTCAGCAACAGCTTTCTTTTTTGAACCTTCAAGAAGCTCCTCTGCTTGGTGCTTTCAGTCCTAAGAAGGGTGACATAGTCCTTTGTCATTTTCTGGCAGATAAATCATGGTACCGAGCAATGATCGTCAATGGGCCTCGAGGAGCCGTTCAATCTCCCCAGGATAAATTTGAAGTATTCTACATTGATTATGGAAATCAAGAAGAAGTAACTTACAGTCAGTTACGACCACTTGATCAATCTGTCTCTGCCGCTCCTGGTATTGCTCAACTGTGCAGCCTTGCATACATGAAGGTTCCAAACTTGGAAGAGGACTTTGGCCAAGAAGCAGCTGAATATTTGAGCGAACTCACTTTAGGCAGTGGCAAAGAATTCAGGGCCAAGGTTGAGGACAGAGATGCTTCAGGAGGGAAAACGAAAGGGCAGGGAACTGGGACGGTTCTTGCTGTAACTCTTGTTGCTGTGGATACCGAGATCAGCGTTAATGCTGCCATGCTACAGGAAGGACTTGGTAGGCTTGAAAAAAGGAACAGACGGGACAGAAGAGAGAAACAGCAAGCTCTTGATAATTTAGAGAAATTCCAGGCAGAGGCAAAGACAAGCCGGCGTGGAATCTGGCAGTATGGAGATATTCAGTCGGACGATGAGGACACTGCCCCCCCTGCAAGAAAGGCTAGTGGCCGGAAGTGA 2952 0.4597 MASTATGWYRGRVKAVPSGDCLVIVALTSSRPGALPEKTITLSSLVAPRLARRGGVDEPYAWESREFLRKLCVGKEVTFKIDYNVPSINREFASVFLGDKNVAMLVVAAGWAKIREQGQQKGEASPYLAELLRLEEQAKQEGVGRWNKSPGAAEASIRNLPPSAIGDPSNLDAMGLLAANKGKPMEGIVEQVRDGSTLRVYLLPEFQFVQVFVAGIQSPQMGRKAASEPVVESEVTADRTDSGDVPAESRAPLTSAQRLAVSAAVAESVADPFAHEAKFFTEMRVLNRDVRVVLEGVDKFSNLIGSVYYPDGESAKDLALELVENGFAKYVEWSANMMEDEAKRKLKAAELQAKKSRLRMWTNYVPPATNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGSPLAERRINLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVSPADGSAAPPGAADARSMDFGSVFLVSNVKSEGDGVPAGSQQPGVNVAELVVARGFGTVIRHRDFDERSNYYDALLAAESRAISGKKGIHSAKDSPVMHITDLTIASAKKAKDFLPFLHRSRRIPAVVEYVLSGHRFKLLIPKETCSIAFAFSGVRCPGRDEPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNVAVTLLEAGLAKLQTSFGSDRIPDLHLLEQAEQSAKRQKLKIWENYVEGEEVSNGATVENKQQEVLKVVVTEVLGGGKFYVQPAGDQKIASIQQQLSFLNLQEAPLLGAFSPKKGDIVLCHFLADKSWYRAMIVNGPRGAVQSPQDKFEVFYIDYGNQEEVTYSQLRPLDQSVSAAPGIAQLCSLAYMKVPNLEEDFGQEAAEYLSELTLGSGKEFRAKVEDRDASGGKTKGQGTGTVLAVTLVAVDTEISVNAAMLQEGLGRLEKRNRRDRREKQQALDNLEKFQAEAKTSRRGIWQYGDIQSDDEDTAPPARKASGRK* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3623 983 PIRSF RISC-Tudor-SN 1 974 IPR016685 GO:0016442|GO:0031047
Amo13g3623 983 ProSiteProfiles Thermonuclease domain profile. 377 551 IPR016071 -
Amo13g3623 983 Pfam Staphylococcal nuclease homologue 611 708 IPR016071 -
Amo13g3623 983 Pfam Staphylococcal nuclease homologue 269 362 IPR016071 -
Amo13g3623 983 Pfam Staphylococcal nuclease homologue 40 147 IPR016071 -
Amo13g3623 983 Pfam Staphylococcal nuclease homologue 853 961 IPR016071 -
Amo13g3623 983 ProSiteProfiles Thermonuclease domain profile. 183 363 IPR016071 -
Amo13g3623 983 SUPERFAMILY Staphylococcal nuclease 575 709 IPR035437 -
Amo13g3623 983 PANTHER EBNA2 BINDING PROTEIN P100 3 979 - -
Amo13g3623 983 ProSiteProfiles Thermonuclease domain profile. 7 148 IPR016071 -
Amo13g3623 983 SUPERFAMILY Staphylococcal nuclease 374 553 IPR035437 -
Amo13g3623 983 SMART SNASE_2 7 148 IPR016071 -
Amo13g3623 983 SMART SNASE_2 183 363 IPR016071 -
Amo13g3623 983 SMART SNASE_2 581 708 IPR016071 -
Amo13g3623 983 SMART SNASE_2 377 551 IPR016071 -
Amo13g3623 983 ProSiteProfiles Thermonuclease domain profile. 581 708 IPR016071 -
Amo13g3623 983 ProSiteProfiles Tudor domain profile. 774 839 IPR002999 -
Amo13g3623 983 ProSiteProfiles Thermonuclease domain profile. 727 962 IPR016071 -
Amo13g3623 983 Gene3D - 731 963 IPR035437 -
Amo13g3623 983 Gene3D - 175 374 IPR035437 -
Amo13g3623 983 Gene3D - 747 843 - -
Amo13g3623 983 Coils Coil 924 951 - -
Amo13g3623 983 Gene3D - 563 706 IPR035437 -
Amo13g3623 983 Coils Coil 339 359 - -
Amo13g3623 983 MobiDBLite consensus disorder prediction 948 983 - -
Amo13g3623 983 MobiDBLite consensus disorder prediction 223 250 - -
Amo13g3623 983 Pfam Tudor domain 726 849 IPR002999 -
Amo13g3623 983 Gene3D - 375 559 IPR035437 -
Amo13g3623 983 Gene3D - 7 153 IPR035437 -
Amo13g3623 983 CDD TUDOR 778 831 IPR002999 -
Amo13g3623 983 SMART TUDOR_7 773 837 IPR002999 -
Amo13g3623 983 PANTHER RIBONUCLEASE TUDOR 1 3 979 - -
Amo13g3623 983 SUPERFAMILY Staphylococcal nuclease 785 968 IPR035437 -
Amo13g3623 983 SUPERFAMILY Staphylococcal nuclease 4 149 IPR035437 -
Amo13g3623 983 SUPERFAMILY Staphylococcal nuclease 180 367 IPR035437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3623 Amo-Chr13 122996032 123002952 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3623 K15979 - gmx:100809534 1642.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3623 13 122996032 123002952 Amo03g2687 03 115355262 115362163 hybridization
Amo13g3623 13 122996032 123002952 Amo08g2308 08 36481389 36487106 PCT