Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3621 ATGTTATGTGTGTGGCATGTATGTTATATCTACCAAGCCGCTACAATACACAAACTAAAGTTAGAAGAGTTTGTAGAAAGGGCTACCTACAAAATCATATCTTTGCATCCTTTACAACAAAACAGAAAGAGAAGAATGGCTTTTTGGAGATCCACAACACTTGAATCCAACAAACACGACTTGAATACCTATGCAAATCCAACAACAACAATGACGACGACCACGACGAGTACGGCAACAACAACAACGGACAAGGAAGCCACTACTACTCATGCTGAGCTCACCAAAATCCCTCTTATGAGAGCCTTCATTGAAACGCACGATCCCTCTTCTATGCATGAAGTGGATGATTTGATGATGAGAAGATTTCTGCGTGCTCGTGATTCAGATGTTGACAAGGCTTCTGCAATGCTCCTCAAGTGCTTGAAATGGAGGCGCTCCTTTGTTCCAAATGGTTTCTTTTCTGTGTCAGAGGTTCCCAATGAAATCACACAGGACAAGGTCTTCGCCCAAGGACATGACAACAGAGGTCGACCAATCGCTGTTATCTTTGGTGCCAGACATTTCCAAAACAAACAGGGTGGTCTCGATGAATTCAAACGTTTTGTTGTGTATGCATTTGACAAGTTATGTGCCAGTATGCCAGATGGGCAAGAAAAATTTGTGGGCATTGCAGAACTTAAGGGATGGGGATACTCTAACAGTGACGTGCGTGGATACATTACCGCTCTAAGCATTTTGCAGGATTACTACCCTGAAAGATTAGGCAAGTTGTTTATTCTGCACGCACCTTACATATTTATGAAAGTGTGGAAAGTCATTTACCCCTTCATTGACAACAATACCAGGAAAAAGATTGTATTTGTGGAGAACAAGAAGCTGAAACCAACACTGCTAGAAGATATAGAGGAAAGTCAGCTTCCAGAGATATATGGAGGCCAATTGCCATTAGTCCCAATACAAGATAGCTGA 972 0.4198 MLCVWHVCYIYQAATIHKLKLEEFVERATYKIISLHPLQQNRKRRMAFWRSTTLESNKHDLNTYANPTTTMTTTTTSTATTTTDKEATTTHAELTKIPLMRAFIETHDPSSMHEVDDLMMRRFLRARDSDVDKASAMLLKCLKWRRSFVPNGFFSVSEVPNEITQDKVFAQGHDNRGRPIAVIFGARHFQNKQGGLDEFKRFVVYAFDKLCASMPDGQEKFVGIAELKGWGYSNSDVRGYITALSILQDYYPERLGKLFILHAPYIFMKVWKVIYPFIDNNTRKKIVFVENKKLKPTLLEDIEESQLPEIYGGQLPLVPIQDS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3621 323 Pfam CRAL/TRIO domain 167 313 IPR001251 -
Amo13g3621 323 SUPERFAMILY CRAL/TRIO N-terminal domain 71 152 IPR036273 -
Amo13g3621 323 SMART sec14_4 162 316 IPR001251 -
Amo13g3621 323 MobiDBLite consensus disorder prediction 60 87 - -
Amo13g3621 323 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 68 323 - -
Amo13g3621 323 CDD SEC14 168 314 IPR001251 -
Amo13g3621 323 SUPERFAMILY CRAL/TRIO domain 159 316 IPR036865 -
Amo13g3621 323 SMART CRAL_TRIO_N_2 116 141 IPR011074 -
Amo13g3621 323 PANTHER OS03G0850700 PROTEIN 68 323 - -
Amo13g3621 323 Gene3D - 49 322 IPR036865 -
Amo13g3621 323 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 156 319 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3621 Amo-Chr13 122907856 122913988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3621 120 286 Acyl Lipid Metabolism Gene Families AT5G47730 27.717 6.41e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3621 - - aip:107634602 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3621 13 122907856 122913988 Amo03g2665 03 115078813 115083056 hybridization
Amo13g3621 13 122907856 122913988 Amo08g2359 08 36973756 36978273 PCT
Amo08g2359 08 36973756 36978273 Amo13g3621 13 122907856 122913988 PCT