Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2359 ATGAAGTCAACGAATCCTGAACCTGAAAAATCATCATCACCATCATCATCATCAAAGGCAGAAACATTAGATTCGGTGAAAGAAAAAGAAGAATCAACAACAACAGCTCAAAATGGTGGTTCATTATTGAAGGATAGCAGTGATGCTGAGGTCACAAAAATCACTCTCATGAGAGCTTTTGTTGAAAGCAAAGATCCGGCTTCTAAGGATGTAGATGATTTAACACTTAGAAGGTTCTTGAGGGCACGTGASTTGGATGTGGAGAAAGCTTCTTACATGTTCCTTAAGTACCTGAAATGGAAACTCTCTTTTGTGCCAAATGGAGTGTCTCCATCAGAGATTCCTGAGGARCTTGCACACAGGAAATTGTTCTCTCAAGGCTTTGATAAACAGGGTAGACCTATAGTTCTTGCATTTGCTGCCAAACATTACCAAGGAAGTGATGGTGGTGATGGCTTCAAAAGGTTCGTAGCATTTACCATTGATAAGTTATGTTCAAGGATGCCAGCGGGGCAAGAAAAGTTTTGTGCTATAGCAGATATTAAGGGTTGGGGATATGCAAACAGTGACATTCGTGGCTACCTTAATGCTCTAACCATTTTGCAGGATTACAACCCAGAAAGAATGGGGAAGCTCTTCATTTTGCATGCACCTTATGTGTTTATGAAAGTGTGGCAAATTATTTATCCTTTTATTGACAACAACACCAAAAAGAAGATAGTATTTGTGGACAACAAAAAGATAACACGAACATTGCTAGAAGAAATAGATGAGAGCCAGCTTCCAGAGATTTATGGTGGTAAATTGCCATTAGTCCCAATCGAAAATTGCTGA 834 0.3921 MKSTNPEPEKSSSPSSSSKAETLDSVKEKEESTTTAQNGGSLLKDSSDAEVTKITLMRAFVESKDPASKDVDDLTLRRFLRARXLDVEKASYMFLKYLKWKLSFVPNGVSPSEIPEELAHRKLFSQGFDKQGRPIVLAFAAKHYQGSDGGDGFKRFVAFTIDKLCSRMPAGQEKFCAIADIKGWGYANSDIRGYLNALTILQDYNPERMGKLFILHAPYVFMKVWQIIYPFIDNNTKKKIVFVDNKKITRTLLEEIDESQLPEIYGGKLPLVPIENC* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2359 277 Gene3D - 3 275 IPR036865 -
Amo08g2359 277 CDD SEC14 124 268 IPR001251 -
Amo08g2359 277 SUPERFAMILY CRAL/TRIO domain 112 270 IPR036865 -
Amo08g2359 277 SMART sec14_4 117 270 IPR001251 -
Amo08g2359 277 MobiDBLite consensus disorder prediction 1 21 - -
Amo08g2359 277 Pfam CRAL/TRIO domain 120 267 IPR001251 -
Amo08g2359 277 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 111 273 IPR001251 -
Amo08g2359 277 PANTHER OS03G0850700 PROTEIN 29 276 - -
Amo08g2359 277 MobiDBLite consensus disorder prediction 1 44 - -
Amo08g2359 277 SUPERFAMILY CRAL/TRIO N-terminal domain 43 108 IPR036273 -
Amo08g2359 277 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 29 276 - -
Amo08g2359 277 SMART CRAL_TRIO_N_2 72 97 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2359 Amo-Chr8 36973756 36978273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2359 76 240 Acyl Lipid Metabolism Gene Families AT1G55840 23.889 8.74e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2359 - - gmx:100797666 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3621 13 122907856 122913988 Amo08g2359 08 36973756 36978273 PCT
Amo03g2665 03 115078813 115083056 Amo08g2359 08 36973756 36978273 PCT
Amo08g2359 08 36973756 36978273 Amo13g3621 13 122907856 122913988 PCT
Amo08g2359 08 36973756 36978273 Amo03g2665 03 115078813 115083056 PCT