Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3618 ATGGGTAACTGCTTCTCCGACGTCCCCGGTGGCCGCGCTGCCATCGGGGGAACTGCCCGAGGCCTCCTCAACGCCATCGACGCTCCCAACGACGCTGTCGACAACTTCCTCAGGTCCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCCGGCTTGCGTGATCGAGATGTTCTCTCTAAGAGTGATCCAATGATGGTTCTTTATACAAGAGGGAAACATGGAGCACTTGAGGAAATCGGCCGTACTGAAGTAGTTCTGAATTCTTTGGATCCTAAGTGGATTACTAAACACTTAATCATGTATCATTTCGAGGTTGTTCAGTTTTTAGTGTTTCGAGTGTACGACGTTGATACTCAGTTTCACAATTTGGATGTGAAGATGCTTAAGCTAGAAGAGCAACAATTTCTAGGTGAGGCAACTTGTGCATTATCGGAGATAATTATAAAGTCTGATCGATCATTGGCATTAGAGCTACGTAGAGAAGATCCTATCAGATCTATGCATTCCCAAAATTGCGGGAAGCTCTTGGTGCATGCAGAGGAATGTGTTGGCTCAAAGACTACAGTAGAGTTGATATTTAGGTGCTCAGATTTGGAAAATAGGGATCTCTTCTCAAAAAGTGATCCTTTTTTGATAATATCAAAACTTGTGGAAGGTGGTACCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCTCAGCCCACAGTGGAAGCCAGTGTTCTTAAACATTCAACAAGTAGGAGGCAAGGACAATCCTTTGATACTAGAGTGTTATAACTTCAATACCAATGGCAAACATGATTTGATAGGAAAAGTGCAAAAGTCTTTGGCAGAGTTGGAGAAGCTTCATGCTAGTGGTCAAGGAGAAACTTTATTTTTGCCTACTGGCGGTGGTCATAATTCTCATAACAAGGTATTAAAGAGCCGGGTATATCTGGACAAATTTTCTGAAAGTGTCCAATATAGTTTCCTTGATTACTTGTCTGCGGGTTTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGGAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAAGGCAATTGTTGAGGTTGGAGAGGTGCTACAGTTTTATGATTCAGACAAACGATTTCCTACATGGGGATTTGGTGCCCGACCAATTGATGGTCCTGTTTCCCATTGTTTTAACCTGAATGGAAGCAGTCACTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTTATTGCCAGCCAATCTGTAGCAACTGGTGCAAGAAAGTATTTTGTTTTGTTAATAATCACAGATGGAGTGGTGACAGATCTCCAAGAAACAAAAGATGCCCTTGTTAAAGCCTCTGACCTACCATTATCAATCCTTATCGTTGGAGTTGGAGGAGCTGATTTCAAAGAAATGGAGATTTTAGATGCTGACAAGGGAGAGAGACTCGAAAGTTCATTCGGACGTGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGAGATGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAATTACCTACTCAATTTTTATCGTACATGAGAAACAGGAATATCCAACCTACTCTCTAA 1740 0.423 MGNCFSDVPGGRAAIGGTARGLLNAIDAPNDAVDNFLRSRGYHGLFSQIELSFSASGLRDRDVLSKSDPMMVLYTRGKHGALEEIGRTEVVLNSLDPKWITKHLIMYHFEVVQFLVFRVYDVDTQFHNLDVKMLKLEEQQFLGEATCALSEIIIKSDRSLALELRREDPIRSMHSQNCGKLLVHAEECVGSKTTVELIFRCSDLENRDLFSKSDPFLIISKLVEGGTHIPICKTEVIKNDLSPQWKPVFLNIQQVGGKDNPLILECYNFNTNGKHDLIGKVQKSLAELEKLHASGQGETLFLPTGGGHNSHNKVLKSRVYLDKFSESVQYSFLDYLSAGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQKAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVATGARKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSFGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRNRNIQPTL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3618 579 PANTHER COPINE 1 578 IPR045052 GO:0005544
Amo13g3618 579 SMART C2_3c 198 297 IPR000008 -
Amo13g3618 579 SMART C2_3c 48 161 IPR000008 -
Amo13g3618 579 Gene3D C2 domain 52 194 IPR035892 -
Amo13g3618 579 CDD vWA_copine_like 312 566 IPR010734 -
Amo13g3618 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Amo13g3618 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 170 IPR035892 -
Amo13g3618 579 SUPERFAMILY vWA-like 342 524 IPR036465 -
Amo13g3618 579 Gene3D C2 domain 195 310 IPR035892 -
Amo13g3618 579 SMART VWA_4 341 538 IPR002035 -
Amo13g3618 579 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 578 - -
Amo13g3618 579 CDD C2A_Copine 47 169 - -
Amo13g3618 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 288 IPR035892 -
Amo13g3618 579 Pfam C2 domain 54 153 IPR000008 -
Amo13g3618 579 Pfam C2 domain 198 290 IPR000008 -
Amo13g3618 579 CDD C2B_Copine 195 290 IPR037768 -
Amo13g3618 579 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Amo13g3618 579 ProSiteProfiles C2 domain profile. 177 300 IPR000008 -
Amo13g3618 579 Pfam Copine 362 577 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3618 Amo-Chr13 122885915 122891159 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3618 - - gmx:100807801 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3618 13 122885915 122891159 Amo03g2662 03 115057541 115063102 hybridization
Amo13g3618 13 122885915 122891159 Amo08g2362 08 37030325 37037255 PCT
Amo08g2362 08 37030325 37037255 Amo13g3618 13 122885915 122891159 PCT