Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2362 ATGGGAAACTGCTGCTCTGACGTCGCCGGTGGCCATGCCTCCATCGGTACCACTGCGGGAGATCTCCGGCATCAGGCTGACACCGCCAACGACGCCGTCGACTACTTCCTCCGCTCCCGAGGCCACCGCGGCCTCTTCTCTCAGATCGAGTTATTGTTCTCCGCTTCGGGATTGCGCGATAGAGATGTGCTCTCAAAGAGTGACCCAATGTTGGTTCTTTATACGAAAGGAAAAAATGGAGCACTTGAGGAACTTGGGCGCACAGAAGTAGTTCTAAATTCATTGGATCCAACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTCCAAGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTGAAGATGCTTAAGCTGGAAGAGCAGCAATTTCTTGGTGAGGCGACCTGTGCATTATCTGAGATAATTACAAGATTTGATCAATCATTGACGTTAGATCTACACAGAGATGACTTTATCACATCAACCCACTCACAGAACTATGGGAAGCTCTTAGTTCATTGTGAAGAATCTCTTAGCTCAAAGACTGCAATAGAGATGATTTTCAGGTGTTCGGATTTGGAATATAGAGATCTATTCTCAAGAAGTGATCCTTTTTTACTGATATCAAAAGTGGTTGAAGGTGGTATGCAAATTCCCATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATGTGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAGGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATCTGATGGGAAAAGTGAAGAGATCTTTGCTGGAGTTGGAAAAGATTCATTCCAGTGGCCAAGGAGAAAAATTATTTCTGCCTAACAAGGTGTTAAACAGCCAGTTATTTGTGGACAAATTCACTGAAAGTGTCCAATATACTTTCCTGGATTATGTGGCTGGGGGATTTGAATTGAACTTTATGGTGGCTGTTGACTTTACAGCTTCAAATGGGAATCCACGCCTTCCAGATTCTTTACATTATCTTGATCCTTCCGGGAGGCAAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTAATACAGTTTTATGACTCAGACAAGCGGTTTCCTGCATGGGGGTTTGGAGCACGACCAATTGATGGCCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGACGGCATACACAAGTGCCTTACTTAATGTGTCTCTTGCAGGGCCGACTCTTTTTGGACCTGTCATAAGCAACGCCGCGCTGATTGCCAGCCATTCTGTAGCAAATGGTGGAAGGAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTTGTTAAAGCCTCGGACCTACCGTTATCAATTCTTATTGTTGGAGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAACCCCTTGAAAGTTCATCTGGACGCGTTGCTTCCCGTGATATAGTCCAATTTGTTCCGTATCGGGATGTTCAAAGTGGAGAGATTTCAGTAGTTCAAGCGCTTCTAGCGGAGTTACCAACGCAATTTTTAACCTACGTGCGAAGTAGAAACATCCAACCGAGCCTCTAG 1716 0.4359 MGNCCSDVAGGHASIGTTAGDLRHQADTANDAVDYFLRSRGHRGLFSQIELLFSASGLRDRDVLSKSDPMLVLYTKGKNGALEELGRTEVVLNSLDPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDVKMLKLEEQQFLGEATCALSEIITRFDQSLTLDLHRDDFITSTHSQNYGKLLVHCEESLSSKTAIEMIFRCSDLEYRDLFSRSDPFLLISKVVEGGMQIPICKTEVIKNDLNPMWKPVFLNIQQVGGKDSPLIIECYNFNSNGKHDLMGKVKRSLLELEKIHSSGQGEKLFLPNKVLNSQLFVDKFTESVQYTFLDYVAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRQNAYQRAIVEVGEVIQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMTAYTSALLNVSLAGPTLFGPVISNAALIASHSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGEPLESSSGRVASRDIVQFVPYRDVQSGEISVVQALLAELPTQFLTYVRSRNIQPSL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2362 571 CDD C2A_Copine 47 168 - -
Amo08g2362 571 PANTHER COPINE 1 570 IPR045052 GO:0005544
Amo08g2362 571 CDD vWA_copine_like 304 558 IPR010734 -
Amo08g2362 571 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Amo08g2362 571 SMART C2_3c 198 297 IPR000008 -
Amo08g2362 571 SMART C2_3c 47 161 IPR000008 -
Amo08g2362 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 167 IPR035892 -
Amo08g2362 571 SUPERFAMILY vWA-like 334 516 IPR036465 -
Amo08g2362 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 179 289 IPR035892 -
Amo08g2362 571 SMART VWA_4 333 530 IPR002035 -
Amo08g2362 571 Gene3D C2 domain 51 196 IPR035892 -
Amo08g2362 571 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Amo08g2362 571 Pfam Copine 354 569 IPR010734 -
Amo08g2362 571 CDD C2B_Copine 195 290 IPR037768 -
Amo08g2362 571 PANTHER PROTEIN BONZAI 2 1 570 IPR031116 GO:0005544|GO:0060548
Amo08g2362 571 Pfam C2 domain 198 294 IPR000008 -
Amo08g2362 571 Pfam C2 domain 54 154 IPR000008 -
Amo08g2362 571 Gene3D C2 domain 197 314 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2362 Amo-Chr8 37030325 37037255 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2362 - - gmx:100807801 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3618 13 122885915 122891159 Amo08g2362 08 37030325 37037255 PCT
Amo03g2662 03 115057541 115063102 Amo08g2362 08 37030325 37037255 PCT
Amo08g2362 08 37030325 37037255 Amo13g3618 13 122885915 122891159 PCT
Amo08g2362 08 37030325 37037255 Amo03g2662 03 115057541 115063102 PCT