Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3529 ATGGGTTTCCATGCTCTTGCCAATAGCAAATCCTTCTTCACCAGCGAAACCCACCTTCCTTACCTTCCTTCATTTTCATCTGATAGAAGAAGACCAACACCAACACCACTGACRAGAACACTTCATTTGAATCRAAGACCCAATTCACTAAGGGTCTTTGCCSCGCAGGAAGAGCCCCCGAAGCTCAATAGCCAGGACTTGATGGAACTCAAGTTTGGACGCTTACTTGGAGAGGACCCTAAGCTTACTCTCGCCAAGATAATGGGAAGAAAAGCTAACCCTGATGCTACTTTTCTTGATATTGAGAAATCGTATTATAAGAAGGGGAAACACGTTGAGGTGGAGGAAGTTCCATTTGAAGGTTCTAAGGAAAGGAAGTCATCGAGTAAATTGGATGGTTTGGGTTTGGTGCGGCCTGTTCCGGCTAAAGGGGCAAGCTTCCAATCCAGTGATAACAAAGTTCCATTGGAGATTAAGAAACCGAGCCAACAGCAGAGTAATGCAGGGAATGTCAATAAAAGTATTCTGAAAAAGCCACTGCAGAGTAATGCAGGGAGTCTTAATATAAGTAGTGCTCCTAATGTTATTCTGAGAAAGCCAACCGTGTATAAAGAGGATGACGAAGACGTGTTGTCGAGGTTGAGAGTAAGACCAAATTTGTATCAGCACATGCGGGATGGACAAGTGAAGGAGAAGTTTAGTGATATGTCGCTTTTGAGGAAGCCTGAACCACCAATTGCCAAGGATGAAGATACAAACCAAGAGTCTTCTACTCGTGCGGACAATGAAAATGATTTGAAGATCAGTGTAGAAGATTCAAGAGGTAAAGCTGGTAACTGGACATTATTAGAACAGCCTCATAGACCGGAGAGCAACAATGATGAACAGTCTGCTGATTCAAATGTTATGCTTAAAAATGATGAATTGGAGCAGCATTATGAGTTCCARCAGGAGCTGTCTGATTCAAGTCAACTGTCAAATTTAAATTCAGTTGATAAAGTGGACTTGTCTGTGCAAGTTCCRCTACAGGGAAAGCCGCAAAGATTAGACCAACATGTGAAGCAAACCTCAGATGTTGTTGAAGAGAATGCTTTTATGAATACCGGAGGTTACAAAAACAATGATGAACTAGGGAATCTTGTYGATGTTTCAGATTTTCAGGAGGGTGAAGATGCTGATTGGACCAGGGCGGAAGATTTGATTAGGAATGGAGATAGGGCAGATGTGGAAATATTAAGTTGTAGTAGCAAAGGCTTCATTGTATCATTTGGTTCTTTGGTAGGATTCCTGCCGTACCGTAACCTTGTTTCCAAGTGGAAGTTCTTAGCTTTTGAGTCATGGTTAAGAAAGAAGGGATTGGATCCATCCATGTACAAGCAGAGTTTAGACACTATTACAAGCTATGATGCTGAAAAAAATAAAATTTCTCCCAATTCTCCCCTATATCAGGAGAATGATACTAATGTTGAAGAGAAATTTTCTCCAGATATCAAAATGGAAGATCTGTTAAGGATTTATGACCAAGAGAAAATTGAGTTTTTGTCCTCTTTTATTGGGCAGAAAGTTAGAGCAAATCTATTATCCGTAGAAAGAAAATCTAGAAAGCTCATATTTTCATTAAAACCAAAAGAGAAGGAAGACCTACTTGAGAAGAAGAGAAATCTCATGGCTAGACTTCAGGTTGGGGATATAGTAAAATGTTGCATCCAGAAGATAACTTACTTTGGGATTTTTGTAGAGCTTGAAGGGGAGTCTGCACTAATTCATCAATCAGAATTATCATGGGATGCCACCTTGAACCCAGCATCATACTTCAAGATTGGTCAGGTTATAGAGGCAAAAGTTCTGCAATTAGACTTTGCTCTTGGGCGCATATCTTTATCGTTAAAGGGAGTCACGCCCGATCCATTAATGGATTCCTTGGAGTCTGTAGTTGGGGAGCATGGACACTTAGATGGGAGACTGGAAGAAGCTCAAACAGATGAGGAGTGGCCTGAAGTTGAATCTCTCATCAAAGAATTACAAAAGATTGAGGGGATCGAGTCTGTTTCAAAAGGCCGGTTCTTCAGAAGCCCTGGTTTGGCACCAACTTTCCAGGTTTACATGGCATCGATCTTCGACAATCAGTACAAGTTGCTGGCTCGATTTGGAAACAAAATACAAGAGGTGATAGTTGAAACGTGTATAGATAAAGAAAGGATGAAGTCGGTGATAATGACATGTACCAATAGAGTGGAATAG 2241 0.4087 MGFHALANSKSFFTSETHLPYLPSFSSDRRRPTPTPLTRTLHLNXRPNSLRVFAXQEEPPKLNSQDLMELKFGRLLGEDPKLTLAKIMGRKANPDATFLDIEKSYYKKGKHVEVEEVPFEGSKERKSSSKLDGLGLVRPVPAKGASFQSSDNKVPLEIKKPSQQQSNAGNVNKSILKKPLQSNAGSLNISSAPNVILRKPTVYKEDDEDVLSRLRVRPNLYQHMRDGQVKEKFSDMSLLRKPEPPIAKDEDTNQESSTRADNENDLKISVEDSRGKAGNWTLLEQPHRPESNNDEQSADSNVMLKNDELEQHYEFQQELSDSSQLSNLNSVDKVDLSVQVPLQGKPQRLDQHVKQTSDVVEENAFMNTGGYKNNDELGNLVDVSDFQEGEDADWTRAEDLIRNGDRADVEILSCSSKGFIVSFGSLVGFLPYRNLVSKWKFLAFESWLRKKGLDPSMYKQSLDTITSYDAEKNKISPNSPLYQENDTNVEEKFSPDIKMEDLLRIYDQEKIEFLSSFIGQKVRANLLSVERKSRKLIFSLKPKEKEDLLEKKRNLMARLQVGDIVKCCIQKITYFGIFVELEGESALIHQSELSWDATLNPASYFKIGQVIEAKVLQLDFALGRISLSLKGVTPDPLMDSLESVVGEHGHLDGRLEEAQTDEEWPEVESLIKELQKIEGIESVSKGRFFRSPGLAPTFQVYMASIFDNQYKLLARFGNKIQEVIVETCIDKERMKSVIMTCTNRVE* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3529 746 MobiDBLite consensus disorder prediction 225 326 - -
Amo13g3529 746 Gene3D - 542 632 IPR012340 -
Amo13g3529 746 MobiDBLite consensus disorder prediction 225 272 - -
Amo13g3529 746 MobiDBLite consensus disorder prediction 141 177 - -
Amo13g3529 746 ProSiteProfiles S1 domain profile. 562 630 IPR003029 GO:0003676
Amo13g3529 746 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 21 746 - -
Amo13g3529 746 Pfam S1 RNA binding domain 559 630 IPR003029 GO:0003676
Amo13g3529 746 SMART S1_6 560 630 IPR022967 -
Amo13g3529 746 SMART S1_6 402 541 IPR022967 -
Amo13g3529 746 MobiDBLite consensus disorder prediction 145 177 - -
Amo13g3529 746 SUPERFAMILY Nucleic acid-binding proteins 547 653 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3529 Amo-Chr13 119717452 119721770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3529 - - lang:109342045 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3529 13 119717452 119721770 Amo13g3529 13 119717452 119721770 ECH
Amo13g3529 13 119717452 119721770 Amo03g2516 03 110008906 110013354 hybridization