Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2516 ATGGGTTTCCATGCACTTGCCAATAGCAAATCCTTCTTCACCAGCGAAACCCACCTTCCTTACCTTCCTTCATTTTCATCTGATAGAAGAAGACCAACACCAACACCACTGACGAGAACACTTCATTTGAATCGAAGACCCAATTCACTAAGGGTCTTTGCCACGCAGGAAGAGCCCCCGAAGCTCAATAGCCAGGACTTGATGGAACTCAAGTTTGGACGCTTACTTGGAGAGGACCCTAAGCTTACTCTCGCCAAGATAATGGGAAGAAAAGCTAACCCTGATGCTACTTTTCTTGATATTGAGAAATCGTATTATAAGAAGGGGAAACACGTTGAGGTGGAGGAAGTTCCATTTGAAGGTTCTAAGGAAAGGAAGTCATCGAGTAAATTGGATGGTTTGGGTTTGGTGCGGCCTGTTCCGGCTAAAGGGGCAAGCTTCCAATCCATTGATAACAAAGTTCCATTGGAGATTAAGAAACCGAGCCAACAGCAGAGTAATGCAGGGAATGTCAATAAAAGTATTCTGAAAAGGCCACTGCAGAGTAATGCAGGGAGTCTTAATGTAAGTAGTGCTCCTAATGTTATTCTGAGAAAGCCAACCGTGTATAAAGAGGATGACGAGGACGTGTTGTCAAGGTTGAGAGTAAGACCAAATTTGTATCAGCACATGCGGGATGGACAAGTGAAGGAGACGTTTAGTGATATGTCGCTTTTGAGGAAGCCTGAACCACCAATTGCCAAGGATGAAGATACAAACCAAGAGTCTTCTACTCGTTCGGACAATGAAAATGATTTGAAGATCAGTGTAGAAGATTCAAGAGGTAAAGCTGGTAACTGGACATTATTAGAACAGCCTCATAGACCGGAGAGCAACAATGATGAACAGTCTGCTGATTCAAATGTTATGCTTAAAAATGATGAATTGGAGCAGCATTATGAGTTCCAGCAGGAGCTGTCTGATTCAAGTCAACTGTCAAATTTAAATTCAGTTGATAAAGTGGACTTGTCTGTGCAAGTTCCACTACAGGGAAAGCCGCAAAGATTAGACCAACATGTGAAGCAAACCTCAGATGTTGTTGAAGAGAATGCTTTTATGAATACCGGAGGTTACAAAAACAATGATGAACTAGGGAATCTTGTTGATGTTTCAGATTTTCAGGAGGGTGAAGATGCTGATTGGACCAGGGCAGAAGATTTGATTAGGAATGGAGATAGGGCAGATGTGGAAATATTAAGTTGTAGTAGCAAAGGCTTCATTGTATCTTTTGGATCTTTGGTAGGATTCCTGCCGTACCGTAACCTTGTTTCCAAGTGGAAGTTCTTAGCTTTTGAGTCATGGTTAAGAAAGAAGGGATTGGATCCATCCATGTACAAGCAGAGTTTAGACACTATTACAACCTATGATGCTGAAAAAAATAAAATTTCTCCCAATTCTCCTCTATATCAGGAGAATGATACTAATGTTGAAGAGAAATTTTCTCCAGATATGAAAATGGAAGATCTGTTAAGGATTTATGACCAAGAGAAAATTGAGTTCTTGTCCTCTTTTATTGGGCAGAAAGTTAGAGCAAATCTATTATCCGTAGAAAGAAAATCTAGAAAGCTCATATTTTCATTAAAACCAAAAGAGAAGGAAGACCTACTTGAGAAGAAGAGAAATCTCATGGCTAGACTTCAGGTTGGGGATATAGTAAAATGTTGCATCCAGAAGATAACTTACTTTGGGATTTTTGTAGAGCTTGAAGGGGAGTCTGCACTAATTCATCAATCAGAATTATCATGGGATGCCACCTTGAACCCAGCATCATACTTCAAGATTGGTCAGGTTATAGAGGCAAAAGTTCTGCAATTAGACTTTGCTCTTGGGCGCATATCTTTATCGTTAAAGGGAGTCACGCCCGATCCATTAATGGATTCCTTGGAGTCTGTAGTTGGGGAGCATGGACACTTAGATGGGAGACTGGAAGAAGCTCAAACAGATGAGGAGTGGCCTGAAGTTGAATCTCTCATCAAAGAATTACAAAAGATTGAGGGGATCGAGTCTGTTTCAAAAGGCCGGTTCTTCAGAAGCCCTGGTTTGGCACCAACTTTCCAGGTTTACATGGCATCGATCTTCGACAATCAGTACAAGTTGCTGGCTCGATCTGGAAACAAAATACAAGAGGTGATAGTTGAAACGTGTATAGATAAAGAAAGGATGAAATCGGTGATAATGACATGTACCAATAGAGTGGAATAG 2241 0.4101 MGFHALANSKSFFTSETHLPYLPSFSSDRRRPTPTPLTRTLHLNRRPNSLRVFATQEEPPKLNSQDLMELKFGRLLGEDPKLTLAKIMGRKANPDATFLDIEKSYYKKGKHVEVEEVPFEGSKERKSSSKLDGLGLVRPVPAKGASFQSIDNKVPLEIKKPSQQQSNAGNVNKSILKRPLQSNAGSLNVSSAPNVILRKPTVYKEDDEDVLSRLRVRPNLYQHMRDGQVKETFSDMSLLRKPEPPIAKDEDTNQESSTRSDNENDLKISVEDSRGKAGNWTLLEQPHRPESNNDEQSADSNVMLKNDELEQHYEFQQELSDSSQLSNLNSVDKVDLSVQVPLQGKPQRLDQHVKQTSDVVEENAFMNTGGYKNNDELGNLVDVSDFQEGEDADWTRAEDLIRNGDRADVEILSCSSKGFIVSFGSLVGFLPYRNLVSKWKFLAFESWLRKKGLDPSMYKQSLDTITTYDAEKNKISPNSPLYQENDTNVEEKFSPDMKMEDLLRIYDQEKIEFLSSFIGQKVRANLLSVERKSRKLIFSLKPKEKEDLLEKKRNLMARLQVGDIVKCCIQKITYFGIFVELEGESALIHQSELSWDATLNPASYFKIGQVIEAKVLQLDFALGRISLSLKGVTPDPLMDSLESVVGEHGHLDGRLEEAQTDEEWPEVESLIKELQKIEGIESVSKGRFFRSPGLAPTFQVYMASIFDNQYKLLARSGNKIQEVIVETCIDKERMKSVIMTCTNRVE* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2516 746 ProSiteProfiles S1 domain profile. 562 630 IPR003029 GO:0003676
Amo03g2516 746 MobiDBLite consensus disorder prediction 242 272 - -
Amo03g2516 746 Gene3D - 542 632 IPR012340 -
Amo03g2516 746 Pfam S1 RNA binding domain 559 630 IPR003029 GO:0003676
Amo03g2516 746 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 20 746 - -
Amo03g2516 746 SUPERFAMILY Nucleic acid-binding proteins 547 653 IPR012340 -
Amo03g2516 746 SMART S1_6 402 541 IPR022967 -
Amo03g2516 746 SMART S1_6 560 630 IPR022967 -
Amo03g2516 746 MobiDBLite consensus disorder prediction 225 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2516 Amo-Chr3 110008906 110013354 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2516 - - lang:109342045 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3529 13 119717452 119721770 Amo03g2516 03 110008906 110013354 hybridization