Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3424 ATGGCAGCGACAACAACAACAACAACAAGTGCAGCAGCAACAACAACATCTCTCCTCAAATTACAAAACCAACCCATCAAACCCAAACGTCGCAAGTGCCGAGAAACCACCATCTCCACCTCTGCCCAGGCCCAGGCCCAGGCCCAGGACACTCCCTCTCCCAGTCCATCCTCSGACTACAGGATTCGGTTCTCGCCGGGGCGGTGCTCCCCAATCATGGACTTCATCCAGGCATCCCCAACGGGCAGCAACGGGCACTCGGACCCCTTCCCTTCCAGCTTCACGAAATTCAACTCCGCACTGACGGCGGGCCTCCTGAACCCAATGTCCCCTCCGCCCGACAAGACCCGATCCAGCCCCACACTCTTCGAGATGATGGCCAGCGAGCCCGACACTGCGAGCCACCACAGGCCTCACTCTCAGTCTCAGATCCAACCCCCTAAAMCCCATGTTCCCGTTCTCGACAGGCAAACCCTAATGATGCAGCGGATTTCGGAGCTRTTGGGGTCTCGCAGCCCCGGCAACCAGTTCAACGACGCCGTTTCCAGTGACATCAAGCTCACTCTCACCTCCAAGGATGGCTTTAGTGTKTCCATGAACGTTCATCGCCAAATTCTTGTTGCCCACAGCAGGTTCTTCGCCGTCAAGCTCTCTGACAGGTGGACCAAGCAGAACCCTAGGCCAACTACGCCCTACTTGGTCGAGATCGCTGACTGCGACGACGTTGAGGTTTACATTGAGACCTTGAGCCTTATGTACTGCAATGATATCAGGAAGAGGCTCATGAAGGAGGATGTCTCCAAGGTTTTGGGTATCTTGAAGGTTTCGGCTGCAATTGGATTTGATGCTGGGGTTTTGTCTTCTTTGGAGTATTTGGAAGCGGCACCATGGGCAGAGGATGAAGAGGAGAAGGTTGCCTCCCTCTTGTCTGAGCTTCGTCTTGAATCTGTTGGAGCCGGGGATGTTTTGAAGAGGGTTTCGACTGAAGTGGCAAATGGCAARGAAGAGGGGGGTGATAACGAGGAAGTTCTTCTGAAGCTTATTCGTGTGGTTCTTGAAGGCAAAGATGAGAAGGCCAGGCGTGAYATGAAAGGCCTGGTGTCAAAGATGCTTCGTGAGAATTCGTCCCAGAATGACCTACGGAAAGAGTCATTGTACTTGGCATGTGATGATTGTATGCAATTACTTCATCACCACTTTTTGAAGGCTGCAGCTTCAGACCTGAAGGATGTGGGTCAAATCGCAAGACAGGCTGATAATTTGCATTGGCTTTTGGATATTTTAATTGATAGACAGATTGCTGAGGATTTCCTGAAGACATGGGCTTCTCAGTCAGAATTATCTGAAGCACATTCTAAAGTTCCATCAGTTCACAGGTTTGAGGTTAGCAGAGTCACCGCTAGGTTGTTTGTTGGGATCGGGAAGGGGCAATTATTGGCTTCTAAAGATGTCAGGTGTTTACTTCTGAAAACATGGCTGGTGCCCTTTTATGACGACTTTGGTTGGATGAGGAGGGCATCCAAAGGCCTTGACAGGAACCTAATCGAGGATGGTCTTAGTAACACAATTCTCACTCTGCCACTGTCCTGGCAGCAGGATATTTTGCTTGCTTGGTTTGACCGCTTCTTGAATTCTGGAGAAGATTGCCCAAATATTCAAAGAGGATTTGAAGTTTGGTGGAGAAGAGCTTTCTGGAAGCGGAATGGAGAGCAAGAACAGACAAGACAATTACGAATTACAGCTACAACAGTTGATAATCCTTGA 1764 0.4994 MAATTTTTTSAAATTTSLLKLQNQPIKPKRRKCRETTISTSAQAQAQAQDTPSPSPSSDYRIRFSPGRCSPIMDFIQASPTGSNGHSDPFPSSFTKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDTASHHRPHSQSQIQPPKXHVPVLDRQTLMMQRISELLGSRSPGNQFNDAVSSDIKLTLTSKDGFSVSMNVHRQILVAHSRFFAVKLSDRWTKQNPRPTTPYLVEIADCDDVEVYIETLSLMYCNDIRKRLMKEDVSKVLGILKVSAAIGFDAGVLSSLEYLEAAPWAEDEEEKVASLLSELRLESVGAGDVLKRVSTEVANGKEEGGDNEEVLLKLIRVVLEGKDEKARRDMKGLVSKMLRENSSQNDLRKESLYLACDDCMQLLHHHFLKAAASDLKDVGQIARQADNLHWLLDILIDRQIAEDFLKTWASQSELSEAHSKVPSVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRNLIEDGLSNTILTLPLSWQQDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQEQTRQLRITATTVDNP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3424 587 Gene3D Potassium Channel Kv1.1; Chain A 160 294 IPR011333 -
Amo13g3424 587 MobiDBLite consensus disorder prediction 37 60 - -
Amo13g3424 587 MobiDBLite consensus disorder prediction 76 91 - -
Amo13g3424 587 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 35 585 IPR038920 -
Amo13g3424 587 PANTHER OSJNBA0011J08.25 PROTEIN 35 585 - -
Amo13g3424 587 MobiDBLite consensus disorder prediction 1 91 - -
Amo13g3424 587 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g3424 587 ProSiteProfiles BTB domain profile. 183 261 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3424 Amo-Chr13 115157566 115161435 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3424 - - ccaj:109800730 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3424 13 115157566 115161435 Amo13g3424 13 115157566 115161435 ECH
Amo13g3424 13 115157566 115161435 Amo03g2429 03 104351303 104354622 hybridization
Amo13g3424 13 115157566 115161435 Amo10g2084 10 74669977 74671908 PCT
Amo13g3424 13 115157566 115161435 Amo20g2574 20 120523282 120526088 PCT