Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3386 ATGAAGTGCCGATCGGTGGCTTGCATTTGGTCTGGCACCCCCTTCCCCCACCGTGTCACCGCCGTCGCCGCCTTCTCCTCCCCGCCCTCCCTCTTCACCTCCGGATCCGATGGCTCCATCATCTGGTGGTCCATTTCCCCCCAAGTTAAAGCAGTGGCCCTCTTGTGCGGTCACGCAGCTTCCATCACTGATCTTAGCACTTGCAGCCCTCTTCCCGTCGAAGAAGAAGCTGCTGCCGCCGATCATGGTGATGCTGGTGGTGGTGGTGGTGGTGAACGTGGTTCGAGTGATTTAGCGGTGAATTGTAGTTCAAGTAGTAATTTTAGTAGCGCCTTGGTAAGCGCTTGTTCTGATGGGTTCTTGTGTGTTTGGAGTAAAAGCAGTGGACATTGCCGTTGCCGGAGGAAACTGCCACCTTGGGTCGGAACACCGCGCATCATTCGGCCGTTGCCCTCGAGGCCGAGATATGTGTGCATTGCTTGTTCCTACATGGAACAATCTGAAAGCCTTTCTAAATGTACCATTGTTCTTGTAAGACACGTACTCGCTTCCTTACTCAGACTTTGGATTTCATGGGAACCAGTTAGGTTTATGGCTTTAGTGTTAGGTGATAGTGATGAAAAGGGGTATTCTGTACTTGTGGCTGATTCTGCTGGCAAAAGGCAAATGGTTTCGATATCAGATGACCCCCTTGASCGTGGGGAACCACACAAGGAAACATCTCAGTTGGAGAGTTCTTTTTACTCTGACGGATTGAGTGGTGTGGATCGTGTTGTTTCAGTTTTAACTTACAGGGGTATTGTTGCTTATGTGCTGGAAAYTCGCTGTGAATTCAAGTTATTGTCAAYTGATACTACCATTGGAGAGGTTTCCTTTGACAGCAATCTGATCTGTTTAGARGGGCATTTGAATCAAACACATATTGTGGGTGGCCTTTTTCTTGAAAGTGATGATGCAGGGAATTCAGTCAATTTTGTTGAAAGCAGCAACTTGATATCAGTAACTTTTGTTGTTTGGAATAATATAGGGTCTGCAGTTATCTATAAGATAATGAATCAGAATGATGTTTTTCAATGTGAACCTCATTCTGAGATTCCTGCTACTCCTTGTCAATCTGATATGAGATTATCTGTTATTTTCCTACAAATAAATCATTATCTTGTCTGCATCAAGTCAATTTGCTTTCATTTTGAGGAACCTTTGCTATGGAGACCACATGTCACAATCTGGTCACTGCATAGTTTTGATGATAAGCCTGGTAAATTATACCGTCAATACAGGATGATCAGTGATGGTGAATCTTTCGTGCACTGTTTTGGGAAGTCTACTCAGCTTGAAGGACTGGATAGTCTAGAGGCTAAATCTTTTGATCAAAATCAAAGTTCAGAAGATATAAACACCATTCATGTTGATAACATTAGTGATTATTGTGCTAACAAGGGAAAGATGGTCTCTTCTTCCATGATTATCTCTGAGAACCTCTTCACTCCTTATGCTGTTGTATATGGTTTTGTAAGCGGAGAAATAGAGCTTCTAAGATTTGATCTGTTTCAAGGWATTTGCTTTAATGATGCAAGTTCCAARCCTGATGAAAAGTCTATCACATGCAAGCKGCACTTTTCAGGACATACAGGCGCTGTACTTTGTTTGGCAGCACARCAAATGATGGGTAATGCCAATGGCCAAAATCTAAAACGGGTTTTGGTGTCTGGAAGTGCGGATTGTACAATTCGTATATGGGATCTTGACACTAGCCGTCTTATTATGGTAATGCATCATCATGTGGCTCCATTACGTCAAATTATTCTTCCCCCATCTTTGACTGGACATCCTTGGAGTGACTGCTTCCTCTCAGTTGGAGAGGATGCATGTGTAGCTCTTGTTTCTATAGAGACTCTGCGGGTGGAGAGAATGTTCCCTGGACATGTGAACTATCCATCAAAAGTTGTATGGGATGGATCAAGAGGTTATATTGCCTGTCTCTGTCAAACACATTATGGAACTTCTGATGCTACTGATGTGTTGTACATTTGGGATGTAAAGACAGGTTCTCGCGAGCGAGTCCTGCGTGGGACAGCTGCGCATTCAATGTTTAATCACTTTTGTAAAAACATTAGCATGAATTCCATATCTGGCAAATTGCTGAATGGAAATACATCAGTTTCTTCTTTACTTCTTCCGGTAATTGATGATGCAAGGCTCTCTAACTCCCCTGTCAACCTGTCAGAGAACTCACTCACTTCTTCAAAGTCATCACCYAATATTTCAAACATGACTGAGTTGAATTATTCCAGAAGAAATGGAGGCAAAGGAAATTCACCAAAGCCAACTTCATCTTCTCTGTTTAATCTCTGGGGTAACAAGCTTCCTGTCAAATGCGCATGCCCTTTTCCTGGCGTTGTGTCTCTGAGTTTTGATCTTGCCTCGCTGATGCTCTCTTATTGGGGGAATGAATTCATGGAAAATGGTAATTACAATTTGAAGAAGCAAGAAGTTCAGGGTCAAAATTCTGGCGACCAGTATGAAGAATACTTGCTTCGATATAGCCTGTCTATTTTACATTTATGGAATGTAGACAGTGACCTTGATAACTTGCTGATAAGTGACATGAAGCTGAGGAAACCAGAGAATTTTATAGTAGGTTCAGGTCTACAGGGGGATAAAGGATCATTGACATTGACCTTTCCTGGTCTGAGTGCTACTCTAGAGCTCTGGAAATCGTCATCTGAGTTTTGTGCAATGAGATCATTGACAATGGTATCCCTTGCCCAACGTCTGGTTAGCTTATCTCGCTCTGGCTCAGCAGCAAGCAGTGCTTTAGCAGCATTCTATACCCGCAATTTCATGGAAAAGTTTTCAGATATGAAGCCACCTTCATTACAGCTTCTGGTGGCCTTTTGGCAAGATGAGAGTGAACATGTGCGCTTAGCAGCACGCTCTATATTTCATTGTGCTGCCTCTCATGCTATTCCACTACCTCTATGCAATACAAAACCACCTGAGTCAACTAAGACAAGCTCCCAATCTGGAAGTAGAGGCAAAAGCATATCTCCTAGGTCAGAAAAACAAGGAATTTCCCATGSTGAAGAATCCAATATAGTTGCTTGGTTGGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGGGGAACAAGTCAAGATGCTATGACATCTCACATAATTGTTGCTGCTGCATTGGCTATCTGGTATCCTAGTCTTGTAAAGCCAAGTCTTGCCSCCTTAGTTGTTCATCCACTGATGAAGTTGGCTATGGCCATGAATGAGAAATSTAGCTCCACTGCGGCRGAGCTKCTTGCAGAGGGCATGGAGAGTACATGGAAAGGATGRATGGCCTCTGAGATACCTCATCTGATTGTGGATATTTTTTTCCAAGTAGAGTTGAGTGGTCCAACTGCCAAAGAAATTCCAGCTTCATCATTTGCTATTAAAAAGACTTTGGTTGAAGTTCTTCTTCCAAGTTTAGCTATGGTTGATATACCAGGTTTTTTGTCTGTAATAGAGAGACAGATTTGGTCTACTGCATCTGATTCGTCTGTCCACTTGGTGTCCCTCTTGACTCTTATAAGGATTATGCGTGGTTCTCCAAGAAACTTGGCTCAATSCCTTGACAAGGTGGTAAACTTCATTTTACATACTGTAGATCCTAGCAACTCAGTTATGCGGAAAGCATGTTACCAGACTTCAATGACAACTTTAAAGGAGGTTGTACGTGTGTATCCTATGGTTGCTGTCAATGATTCATGGACAAGACTTGCAGTTGGGGATGTGATTGGTGAAATTAGCACCTCAAGCATTAGGGTCTATGATATGCAAAGTGTGACAATGATAAAGGTTTTGGATGCAAGTGGGCCTCCTGGACTTCCAAGTTTGCTCACACCAGCATCAGGAACAATGTTAACTGCTGCAATTTCAGCTCTTAGCTTTTCTCCTGATGGAGAGGGGCTAGTTGCTTTCTCTGAACATGGGCTAATGATTAGATGGTGGTCACTAGGATCTGTCTGGTGGGAGAAACTGAGCCGGAACTTTATTCCTGTCCAGTGCACCAAACTTATATTTGTCCCGCCATGGGAGGGATTCTCACCTAATTCATCCAGGTCAAGCATAATCGCCAACATTTTGGAAAATGACAGGAAGCTGAGTGTTCTGGACAATGCTAGGGATTCAAATCACGGGGACAGTATGAAACAATTGCTTCATAATCTGGACCTTACTTATAGGCTAGAATGGGTAGGTGATAGGAAAATACTCCTTACAAGACATGGCCAGGAATTGGGCACTTTTCAGTTATAA 4314 0.4279 MKCRSVACIWSGTPFPHRVTAVAAFSSPPSLFTSGSDGSIIWWSISPQVKAVALLCGHAASITDLSTCSPLPVEEEAAAADHGDAGGGGGGERGSSDLAVNCSSSSNFSSALVSACSDGFLCVWSKSSGHCRCRRKLPPWVGTPRIIRPLPSRPRYVCIACSYMEQSESLSKCTIVLVRHVLASLLRLWISWEPVRFMALVLGDSDEKGYSVLVADSAGKRQMVSISDDPLXRGEPHKETSQLESSFYSDGLSGVDRVVSVLTYRGIVAYVLEXRCEFKLLSXDTTIGEVSFDSNLICLEGHLNQTHIVGGLFLESDDAGNSVNFVESSNLISVTFVVWNNIGSAVIYKIMNQNDVFQCEPHSEIPATPCQSDMRLSVIFLQINHYLVCIKSICFHFEEPLLWRPHVTIWSLHSFDDKPGKLYRQYRMISDGESFVHCFGKSTQLEGLDSLEAKSFDQNQSSEDINTIHVDNISDYCANKGKMVSSSMIISENLFTPYAVVYGFVSGEIELLRFDLFQGICFNDASSKPDEKSITCKXHFSGHTGAVLCLAAQQMMGNANGQNLKRVLVSGSADCTIRIWDLDTSRLIMVMHHHVAPLRQIILPPSLTGHPWSDCFLSVGEDACVALVSIETLRVERMFPGHVNYPSKVVWDGSRGYIACLCQTHYGTSDATDVLYIWDVKTGSRERVLRGTAAHSMFNHFCKNISMNSISGKLLNGNTSVSSLLLPVIDDARLSNSPVNLSENSLTSSKSSPNISNMTELNYSRRNGGKGNSPKPTSSSLFNLWGNKLPVKCACPFPGVVSLSFDLASLMLSYWGNEFMENGNYNLKKQEVQGQNSGDQYEEYLLRYSLSILHLWNVDSDLDNLLISDMKLRKPENFIVGSGLQGDKGSLTLTFPGLSATLELWKSSSEFCAMRSLTMVSLAQRLVSLSRSGSAASSALAAFYTRNFMEKFSDMKPPSLQLLVAFWQDESEHVRLAARSIFHCAASHAIPLPLCNTKPPESTKTSSQSGSRGKSISPRSEKQGISHXEESNIVAWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPSLAXLVVHPLMKLAMAMNEKXSSTAAELLAEGMESTWKGXMASEIPHLIVDIFFQVELSGPTAKEIPASSFAIKKTLVEVLLPSLAMVDIPGFLSVIERQIWSTASDSSVHLVSLLTLIRIMRGSPRNLAQXLDKVVNFILHTVDPSNSVMRKACYQTSMTTLKEVVRVYPMVAVNDSWTRLAVGDVIGEISTSSIRVYDMQSVTMIKVLDASGPPGLPSLLTPASGTMLTAAISALSFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRNFIPVQCTKLIFVPPWEGFSPNSSRSSIIANILENDRKLSVLDNARDSNHGDSMKQLLHNLDLTYRLEWVGDRKILLTRHGQELGTFQL* 1438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3386 1437 MobiDBLite consensus disorder prediction 998 1022 - -
Amo13g3386 1437 SUPERFAMILY ARM repeat 932 1269 IPR016024 -
Amo13g3386 1437 SMART WD40_4 533 581 IPR001680 GO:0005515
Amo13g3386 1437 SMART WD40_4 632 679 IPR001680 GO:0005515
Amo13g3386 1437 SMART WD40_4 1300 1337 IPR001680 GO:0005515
Amo13g3386 1437 SMART WD40_4 5 44 IPR001680 GO:0005515
Amo13g3386 1437 SMART WD40_4 48 125 IPR001680 GO:0005515
Amo13g3386 1437 MobiDBLite consensus disorder prediction 995 1024 - -
Amo13g3386 1437 SUPERFAMILY WD40 repeat-like 1245 1340 IPR036322 GO:0005515
Amo13g3386 1437 Gene3D - 441 763 IPR015943 GO:0005515
Amo13g3386 1437 Pfam WD domain, G-beta repeat 535 581 IPR001680 GO:0005515
Amo13g3386 1437 ProSitePatterns Trp-Asp (WD) repeats signature. 568 582 IPR019775 -
Amo13g3386 1437 Gene3D - 2 165 IPR015943 GO:0005515
Amo13g3386 1437 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1437 - -
Amo13g3386 1437 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 590 IPR001680 GO:0005515
Amo13g3386 1437 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1437 - -
Amo13g3386 1437 SUPERFAMILY WD40 repeat-like 13 691 IPR036322 GO:0005515
Amo13g3386 1437 MobiDBLite consensus disorder prediction 740 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3386 Amo-Chr13 112410244 112418348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3386 K24738 - gmx:100816646 2028.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3386 13 112410244 112418348 Amo13g3386 13 112410244 112418348 ECH
Amo13g3386 13 112410244 112418348 Amo03g2397 03 101849578 101857705 hybridization