Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2397 ATGAAGTGCCGATCGGTGGCTTGCATTTGGTCTGGCACCCCCTTCCCCCACCGTGTCACCGCCGTCGCCGCCTTCTCCTCCCCGCCCTCCCTCTTCACCTCCGGATCCGATGGCTCCATCATCTGGTGGTCCATTTCCCCCCAAGTTAAAGCAGTGGCCCTCTTGTGCGGTCACGCAGCTTCCATCACTGATCTCAGCACTTGCAGCCCTCTTCCCGTCGAAGAAGAAGCCGCTGCCGCCGATCATGGTGATGCTGGTGGTGGTGAACGTGGTTCGAGTGATTTAGCGGTGAATTGTAGTTCAAGTAGTAATTTTAGTAGCGCCTTGGTAAGCGCTTGTTCTGATGGGTTCTTGTGTGTTTGGAGTAAAAGCAGTGGACATTGCCGTTGCCGGAGGAAACTGCCACCTTGGGTCGGAACACCGCGCATCATTCGGCCGTTGCCCTCGAGGTCGAGATATGTGTGCATTGCTTGTTCCTACATGGAACAATCTGTGGAGGGAAATGAAGAGACTCACCCCAGGAAGCCTTCTAAATGTACCATTGTTGTTGTAGACACGTACTCGCTTTCCATTACTCAGACTTTGTTTCATGGGAATTTATCTATCGGCCCAGTTAGGTTTATGGCTTTAGTGTTAGGTGATAGTGATGAAAAGGGGTATTCTGTACTTGTGGCTGATTCTGCTGGCAAAAGGCAAATGGTTTCGATATCAGATGACCCCCTTGAACGTGGGGAACCACACAAGGAAACATCTCAGTTGGAGAGTTCTTTTTACTCTGACGGATTGAGTGGTGTGGATCGTGTTGTTTCAGTTTTAACTTACAGGGGTATTGTTGCTTATGTGCTGGAAAATCGCTGTGAATTCAAGTTATTGTCAAGTGATACTACCATTGGAGAGGTTTCCTTTGACAGCAATCTGATCTGTTTAGACGGGCATTTGAATCAAACACATATTGTGGGTGGCCTTTTTCTTGAAAGTGATGATGCAGGGAATTCAGTCAATTTTGTTGAAAGCAGCAACTTGATATCAGTAACTTTTGTTGTTTGGAATAATATAGGGTCTGCAGTTATCTATAAGATAATGAATCAGAATGATGTTTTTCAATGTGAACCTCATTCTGAGATTCCTGCTACTCCTTGTCAACCTGATATGAGATTATCTGTTATTTTCCTACAAATAAATCATTATCTTGTCTGCATCAAGTCAATTTGCTTTCATTTTGAGGAACCATTGCTATGGAGACCACATGTCACAGTCTGGTCGCTGCATAGTTTTGATGATAAGCCTGGTAAATTATACCGTCAATGCAGGATGATCAGTGATGGTGAATCTTTCGTGCACTGTTTTGGGAAGTCTACTCAGCTTGAAGGACAGGATAGTCTAGAGACTAAATCTTTTGATCAAAATCAAAGTTCAGAAGATATAAACACCATTCATGTTGATAACATTAGTGATTATTGGTCTAACAAGGGAAAGATGGTCTCTTCTTCCATGATTATCTCTGAGAACCTCTTCACTCCTTATGCTGTTGTATATGGTTTTGTAAGCGGAGAAATAGAGCTTCTAAGATTTGATCTGTTTCAAGGCATTTGCTTTAATGATGCAAGTTCCAATCCTGATGAAAAGTCTATCACATGCAAGCCGCACTTTTCAGGACATACAGGCGCTGTACTTTGTTTGGCAGCACACCAAATGATGGGTAATGCCAATGGCCAAAATCTAAAACGGGTTTTGGTGTCTGGAAGTGCGGATTGTACAATTCGTATATGGGATCTTGACACTAGCCGTCTTATTATGGTAATGCATCATCATGTGGCTCCATTACGTCAAATTATTCTTCCCCCATCTTTGACCGGACATCCTTGGAGTGACTGCTTCCTCTCAGTTGGAGAGGATGCATGTGTAGCTCTTGTTTCTATAGAGACTCTGCGGGTGGAGAGAATGTTTCCTGGACATGTGAACTATCCATCAAAAGTTGTATGGGATGGATCAAGAGGTTATATTGCCTGTCTCTGTCAAACACATTGTGGAACTTCTGATGCTACTGATGTGTTGTACATTTGGGATGTAAAGACAGGTTCCCGCGAGCGAGTCCTGCGTGGGACAGCTGCGCATTCAATGTTTAGTCACTTTTGTAAAAACATTAGCATGAATTCCATATCTGGCAAATTGCTGAATGGAAATACATCAGTTTCTTCTTTACTTCTTCCGGTAATTGATGATGCAAGGCTCTCTAATTCCCCTGTCAACCTGTCAGAGAACTCACTCACTTCTTCAAAGTCATCACCAAATATTTCAAACATGACTGAGTTGAATTATTCCAGAAGAAATGGAGGTAAAGGAAATTCACCAAGGCCAACTTCATCTTCTCTGTTTAATCTCTGGGGTAACAAGCTTCCTGTCAAATGCGCATGCCCTTTTCCTGGCGTTGTGTCTCTGAGTTTTGATCTTGCCTCACTGATGCTCTCTTATTGGGGGAATGAATTCATGGAAAATGGTAATTACAATTTGAAGAAGCAAGAAGTTCAGGATCAAAATTCTGGCGACCAGTATGAAGAATACTTGCTTCGATATAGCCTGTCTATTTTACATTTGTGGAGTGTAGACAGTGACCTTGATAACTTGCTGATAAGTGACATGAAGCTGAGGAAACCAGAGAATTTTATAGTAGGTTCAGGTCTACAGGGGGATAAAGGATCATTGACATTGACCTTTCCTGGTCTGAGTGCTACTCTAGAGCTCTGGAAATCGTCATCTGAGTTTTGTGCAATGAGATCATTGACAATGGTATCCCTTGCCCAACGTCTGGTTAGCTTATCTCACTCTGGCTCAGCAGCAAGCAGTGCTTTAGCAGCATTCTATACCCGCAATTTCATGGAAAAGTTTTCAGATATGAAGCCACCTTCATTACAGCTTCTGGTGGCCTTTTGGCAAGATGAGAGTGAACATGTGCGCTTAGCAGCACGCTCTATATTTCATTGTGCTGCCTCTCATGCTATTCCACTACCTCTATGCAATACAAAACCACCTGAGTCAACTAAGACAAGCTCCCAATCTGGAAGTAGAGGCAAAAGCATATCTCCTAGGTCAGAAAAACAAGGAATTTCCCATGATGAAGAATCCAATATAGTTGCTTGGTTGGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGGGGAACAAGTCAAGATGCTATGACATCTCACATAATTGTTGCTGCTGCATTGGCTATCTGGTATCCTAGTCTTGTAAAGCCAAGTCTTGCCTCCTTAGTTGTTCATCCATTGATGAAGTTGGCTATGGCCATGAATGAGAAATTTAGCTCCACTGCGGCTGAGCTACTTGCAGAGGGCATGGAGAGTACATGGAAAGGATGTATGGCCTCTGAGATACCTCATCTGATTGTGGATATTTTTTTCCAAGTAGAGTTGAGTGGTCCAACTGCCAAAGAAATTCCAGCTTCATCATTTGCTATTAAAAAGACTTTGGTTGAAGTTCTTCTTCCAAGTTTAGCTATGGTTGATATACCAGGTTTTTTGTCTGTAATAGAGAGACAGATTTGGTCTACTGCATCTGATTCGTCTGTCCACTTGGTGTCCCTCTTGACTCTTATAAGGATTATGCGTGGTTCTCCAAGAAACTTGGCTCAATACCTTGACAAGGTGGTAAACTTCATTTTACATACTGTAGATCCTAGCAACTCAGTTATGCGGAAAGCATGTTACCAGACTTCAATGACAACTTTAAAGGAGGTTGTACGTGTGTATCCTATGGTTGCTGTCAATGATTCATGGACCAAACTTGCAGTTGGGGATGTGATTGGTGAAATTAGCAGCTCAAGCATTAGGGTCTATGATATGCAAAGTGTGACAATGATAAAGGTTTTGGATGCAAGTGGGCCTCCTGGACTTCCAAGTTTGCTCACACCAGCATCAGGAACAATGTTAACTGCTGCAATTTCAGCTCTTAGCTTTTCTCCTGATGGAGAGGGGCTAGTTGCTTTCTCTGAACATGGGCTAATGATTAGATGGTGGTCACTAGGATCTGTCTGGTGGGAGAAACTGAGCCGGAACTTTATTCCTGTCCAGTGCACCAAACTTATATTTGTTCCGCCGTGGGAGGGATTCTCACCTAATTCATCCAGGTCAAGCATAATCGCCAACATTTTGGAAAATGACAGGAAGCTGAGTGTTCTGGACAATGCTAGGGATTCAAATCACGGGGACAGTATGAAACAATTGCTTCATAATCTGGACCTTACTTATAGGCTAGAATGGGTAGGTGATAGGAAAATACTCCTTACAAGACATGGCCAGGAATTGGGCACTTTTCAGTTATAA 4344 0.4302 MKCRSVACIWSGTPFPHRVTAVAAFSSPPSLFTSGSDGSIIWWSISPQVKAVALLCGHAASITDLSTCSPLPVEEEAAAADHGDAGGGERGSSDLAVNCSSSSNFSSALVSACSDGFLCVWSKSSGHCRCRRKLPPWVGTPRIIRPLPSRSRYVCIACSYMEQSVEGNEETHPRKPSKCTIVVVDTYSLSITQTLFHGNLSIGPVRFMALVLGDSDEKGYSVLVADSAGKRQMVSISDDPLERGEPHKETSQLESSFYSDGLSGVDRVVSVLTYRGIVAYVLENRCEFKLLSSDTTIGEVSFDSNLICLDGHLNQTHIVGGLFLESDDAGNSVNFVESSNLISVTFVVWNNIGSAVIYKIMNQNDVFQCEPHSEIPATPCQPDMRLSVIFLQINHYLVCIKSICFHFEEPLLWRPHVTVWSLHSFDDKPGKLYRQCRMISDGESFVHCFGKSTQLEGQDSLETKSFDQNQSSEDINTIHVDNISDYWSNKGKMVSSSMIISENLFTPYAVVYGFVSGEIELLRFDLFQGICFNDASSNPDEKSITCKPHFSGHTGAVLCLAAHQMMGNANGQNLKRVLVSGSADCTIRIWDLDTSRLIMVMHHHVAPLRQIILPPSLTGHPWSDCFLSVGEDACVALVSIETLRVERMFPGHVNYPSKVVWDGSRGYIACLCQTHCGTSDATDVLYIWDVKTGSRERVLRGTAAHSMFSHFCKNISMNSISGKLLNGNTSVSSLLLPVIDDARLSNSPVNLSENSLTSSKSSPNISNMTELNYSRRNGGKGNSPRPTSSSLFNLWGNKLPVKCACPFPGVVSLSFDLASLMLSYWGNEFMENGNYNLKKQEVQDQNSGDQYEEYLLRYSLSILHLWSVDSDLDNLLISDMKLRKPENFIVGSGLQGDKGSLTLTFPGLSATLELWKSSSEFCAMRSLTMVSLAQRLVSLSHSGSAASSALAAFYTRNFMEKFSDMKPPSLQLLVAFWQDESEHVRLAARSIFHCAASHAIPLPLCNTKPPESTKTSSQSGSRGKSISPRSEKQGISHDEESNIVAWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPSLASLVVHPLMKLAMAMNEKFSSTAAELLAEGMESTWKGCMASEIPHLIVDIFFQVELSGPTAKEIPASSFAIKKTLVEVLLPSLAMVDIPGFLSVIERQIWSTASDSSVHLVSLLTLIRIMRGSPRNLAQYLDKVVNFILHTVDPSNSVMRKACYQTSMTTLKEVVRVYPMVAVNDSWTKLAVGDVIGEISSSSIRVYDMQSVTMIKVLDASGPPGLPSLLTPASGTMLTAAISALSFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRNFIPVQCTKLIFVPPWEGFSPNSSRSSIIANILENDRKLSVLDNARDSNHGDSMKQLLHNLDLTYRLEWVGDRKILLTRHGQELGTFQL* 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2397 1447 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1447 - -
Amo03g2397 1447 SUPERFAMILY WD40 repeat-like 1255 1350 IPR036322 GO:0005515
Amo03g2397 1447 SMART WD40_4 1310 1347 IPR001680 GO:0005515
Amo03g2397 1447 SMART WD40_4 642 689 IPR001680 GO:0005515
Amo03g2397 1447 SMART WD40_4 543 591 IPR001680 GO:0005515
Amo03g2397 1447 SMART WD40_4 5 44 IPR001680 GO:0005515
Amo03g2397 1447 SMART WD40_4 48 122 IPR001680 GO:0005515
Amo03g2397 1447 MobiDBLite consensus disorder prediction 749 785 - -
Amo03g2397 1447 SUPERFAMILY ARM repeat 944 1244 IPR016024 -
Amo03g2397 1447 MobiDBLite consensus disorder prediction 1008 1030 - -
Amo03g2397 1447 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1447 - -
Amo03g2397 1447 ProSitePatterns Trp-Asp (WD) repeats signature. 578 592 IPR019775 -
Amo03g2397 1447 Pfam WD domain, G-beta repeat 546 591 IPR001680 GO:0005515
Amo03g2397 1447 Gene3D - 2 261 IPR015943 GO:0005515
Amo03g2397 1447 MobiDBLite consensus disorder prediction 1005 1037 - -
Amo03g2397 1447 Gene3D - 446 773 IPR015943 GO:0005515
Amo03g2397 1447 SUPERFAMILY WD40 repeat-like 14 702 IPR036322 GO:0005515
Amo03g2397 1447 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 600 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2397 Amo-Chr3 101849578 101857705 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2397 K24738 - gmx:100816646 2116.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3386 13 112410244 112418348 Amo03g2397 03 101849578 101857705 hybridization