Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3314 ATGGTGAAACATCGCTTTAGAGAGTCTATAAAATCTTTGTTTGGAAGTCATGTTGACCCTGAGAAAGAAGAGCAACTGCAGGGAGCTAAAACAGAAATTGATGACAAAGTGAAAAGGATATTGAAACTTATTAAAGATGACAACCTTGAAGAGGATGGCCCCCCTTTAGAGCAATCTAAGAAGGAACCACTTGTTGAACTGATTGAGGATTTCCACAATCAGTACCAATCGCTCTATGCACGATATGATCATTTGACAGGTGAGTTAAGGAAAAAGATTCATGGCAAGCAAGGAGAAAATGAGAGCTCATCGTCCAGTTCAGACTCAGATTCAGATTATTCTTCAAGAGACAAAGTCAGAAAAAATGGACAGCTGGAAAGTGACTTTCAAAAGATAATTGAAGGCTTAAAGCAAGAACTTGAAATGGCTAGTGTGGAAGTTGCTGAATTAAACCGGAGGTTGACAAGTACTCATGAAGAGAAGGAGGATCTTAACTCGAAATATGTTGCAGCATTGAGCAAGATAGAAGAAGCAGAGAAAATAAACATGGATTTGAAATCTGATGCTGAAGCATCGAGTATTCAAAGATCAAAACTTTTGGATGAAAATGCTGAACTAAAAAATCAACTGGACGTTGCTGGTAAGACAGAAGCTGACCTGAGTCAAAGATTGGAGGACTTGAAGACAGAAAAAGATAGTTTGACATCGGCGAAGGAGACAGCTATCCAGCAGATTGTTGAGGAAAAGAAGATTACAGATGACCTGAGAACCACAGTTGATCAACTGAAGGATGCGAAATTCTCTCTTGAGAAAGAATTACAAGTCGTGACAGGGGAAATTTTCATTCTAAAACAGCAGTTAGAGCATGCAGATGAGGAAATGACAAAGGTCAACAACAACCTGAGAGAAACTCAGGAAGAAAATGAATCATTGAAATTGAAACTTTCACAGGCTTCTGATGAGGTCCAGCTTTCTCACAGAAGAATTCAAGAACTTGTAGACGAATTGAGTCAGTTAAAGGAGGAACATGTTGCAGCATTGAGCAAAATAGAAGAAGTAGACAAAATAAACATGGATTTGAAAACCGATGCTGAAGCATCGAGTACTCAAAGATCAAAACTTTTGGATGAGAATGCTGAACTAAAAAATCAACTGAATGTTGCTGGTAAGACAGAAGCTGAGCTGAGTCAAAGATTGGAGGACTTGAAGACAGAAAAAGATAGTTTGACACTGGAGAAGGACACAGCTATCCAGCAGATTGTCGAGGAAAAGAAGATTACGGATGACCTGAGAACGACAGTTGATCAACTGAAGGATGAGAAATTCTTGCTTGAGAAAGAATTACAAGTTATGACAGGGGAAATTTCCATTCTAAAACAGCAGTTAGAGCATGCAGATGAGGAAATGACAAAGGTCAACAACAACCTGAGAGTCAGTGAGGAAGAAACTGAATCATTGAAATTGACAATTTCACAGGCTTCTGATGAGGTTCAGCTTTCTCACAGAAGAATTCAAGAACTTGTAGATGAGTTGAGTCAGTTAAAGGAGAAACATGATGAGAAGGAAAGGGAAGTTTCAATCCTCACCGAGATGCATGAAGGGCATCAGAATGAATCCTCAAATAAAATTAGGGAGCTTGAGGGACAAGTCACAAACCTGGCACTAGAACTAGAATCACATCAAACCCAGAAAAGAGATATGGAGGAGCAAATTAAAAGGGGCACAACTGAAGCAAGGGAACTAGGAGAGCACAATTTAGGGCTACGTAGCCAGATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATTTTCCCTCAAGAAGAAACTTGAAGATAATGAGGAGGAGTCATCCTCTAAAATATTAGATTTGACATCTCAGATAACCAATCTGCTGACTGACATAAGCACATTACATTCAAAAAACAATGAACTGGAAGAGCAGATAATTTCAAAGAGCAGTGAAGCATCAACTCAAGTCAAAAGCATTACTGATAACATGAGTGTGTTGCAGCACGAAGTGGAGTCCCTACAACAACAGAAAGCTGACTTGGAAGTTCAGTTAGTGGAAAAAGTCCAAGAGAATTCAGAGTATGCAATTCACTTGCAAAATCTGAAAGAGGAGGTTGACAAAAAAACCCTGGAACAAGAGAAACTTATGGAAGACACCGAAAATTTACTCATGCAGATAAGGAATCTGGAATCAGAGGTGAGCACTATGAAGAACCAGAAAAGTGTAGATGATGAGCTGATAAGGACTAACAGCCACGAGATTGATCATTTGAGACAAGAGAAGTTGGAGCTACTTGACAAAACAGCAGAATTAGAGAAAACATCATCAGAGAGAGGATCCGCGTTTTCTGTCATCCAGGACACACTTCGTAAGGTAGAGGAAGAGAGTTCAGCTCAAATAATGAATTTGACTGAGCAAATCAACAATCTTCAAAATGATTTGGTTTCCTTGGAGAATCAGAAACAAGAGTCATCACAGCAGTATGACGGACTGAAGTTGGAGGTGGATTCTATACACAGCCAGAAGAGTGAACTTGAAGAGCAAGCAAGAGCTAAAGATCATGAGAACAGCGAGCTGAGAGAGGAAATTATTGGATTGAAGGGAACAATCACTGCGCTGGAGACAACAATGGCAGAAAAGAAGTTTGCGTTTTCCACTTTGCAGGAAAAATTTCATGAGAAAGAGAACGAAGCTTCTGCCTTAACCACCCAAGTGAATAATCTGCAAAATGACTTGCTTTCATTGCAGGGCTTAAAAGAAGAGTTGGAGCTCCACTGTGGAAAAATCAAAGAAGAACATGCAGAAAGGTTTACACTCATAGAGAATGAAAAGAATGAGCTAGCAGGAAAGTCAACCGATCTTCAGAGAACATTAGAAGAACGAGAAGATGCTTATCAGAAGTTAAATGAAGGTTATATACAAATCGAAGGTTGGCTGAAGGAAAGCAAGGTGAGCCTTGAAGTTGCTGAGAAGAAGATTGAAGAAATGGAACGTGAGTTCCATGAAGGCAGTGAGTTTAAGAATCAGATGATGGCTGAACTGGAGCATACAGTGGAGGATCTGAAGAGAGACCTTGAAGAGAAAGGAGATGAAATCAACACTATGTTTGAGAATGTCCGCATGCTCGAGGTTAAGCTTCGTCTTTCCAATCAGAAGTTACGCGTCACAGAACAATTGCTAAGTGAGAAGGAGGAGAGCTTTAGAAAAGCTGAAGAAAAGTTCCAACAAGAGCAGAAAGCTCTTGAAGACATGATTGCTACTTTGTCAGTAAAGCTTGCTGCCAACAATGAAGCTTTTCAGGAAATCATAGCCGGTGTTAAAGAGTGTGTGAACAGCGTGACGGTTGGCATAGAAACCGTGTGCTGGAAATTCTCTGATAAATGTAAAAATCATGAGAACTCTATCTCCAACATGTCTCGTGAGCTTCAGGTTGCAAAGAACGGTTTCAGGGAGATGAACAAGGAAAAAGAGCAATTGCAGACACAGAGACACCAATTGCTGGAGCAGCTGCGGGATAAGAAGGAAGAAGAGTTAGCTTTGAGGGAGAGGATTGAGAAGCTGGAGGCAAAAGCAAGCAAGGATGAATCAGAGAAGACGAATCTGGCAGCGAACATGGCTCAACTGAGGAATACAGTTGGAGAATTGGAGAAGAAGATGAAAGAGAAAGATGATGGCATGTTGGACTTGGGTGAAGAGAAGAGGGAGGCCATAAGGCAGCTTTGTTTGTGGATTGATTATCATCGCAGCCGTTATGACTATCTCAAAGACGTTCTATCAAAGACAGGTAGAGGCCAACGAACGGCTTAA 3828 0.4044 MVKHRFRESIKSLFGSHVDPEKEEQLQGAKTEIDDKVKRILKLIKDDNLEEDGPPLEQSKKEPLVELIEDFHNQYQSLYARYDHLTGELRKKIHGKQGENESSSSSSDSDSDYSSRDKVRKNGQLESDFQKIIEGLKQELEMASVEVAELNRRLTSTHEEKEDLNSKYVAALSKIEEAEKINMDLKSDAEASSIQRSKLLDENAELKNQLDVAGKTEADLSQRLEDLKTEKDSLTSAKETAIQQIVEEKKITDDLRTTVDQLKDAKFSLEKELQVVTGEIFILKQQLEHADEEMTKVNNNLRETQEENESLKLKLSQASDEVQLSHRRIQELVDELSQLKEEHVAALSKIEEVDKINMDLKTDAEASSTQRSKLLDENAELKNQLNVAGKTEAELSQRLEDLKTEKDSLTLEKDTAIQQIVEEKKITDDLRTTVDQLKDEKFLLEKELQVMTGEISILKQQLEHADEEMTKVNNNLRVSEEETESLKLTISQASDEVQLSHRRIQELVDELSQLKEKHDEKEREVSILTEMHEGHQNESSNKIRELEGQVTNLALELESHQTQKRDMEEQIKRGTTEARELGEHNLGLRSQISELEMKSKEREEELFSLKKKLEDNEEESSSKILDLTSQITNLLTDISTLHSKNNELEEQIISKSSEASTQVKSITDNMSVLQHEVESLQQQKADLEVQLVEKVQENSEYAIHLQNLKEEVDKKTLEQEKLMEDTENLLMQIRNLESEVSTMKNQKSVDDELIRTNSHEIDHLRQEKLELLDKTAELEKTSSERGSAFSVIQDTLRKVEEESSAQIMNLTEQINNLQNDLVSLENQKQESSQQYDGLKLEVDSIHSQKSELEEQARAKDHENSELREEIIGLKGTITALETTMAEKKFAFSTLQEKFHEKENEASALTTQVNNLQNDLLSLQGLKEELELHCGKIKEEHAERFTLIENEKNELAGKSTDLQRTLEEREDAYQKLNEGYIQIEGWLKESKVSLEVAEKKIEEMEREFHEGSEFKNQMMAELEHTVEDLKRDLEEKGDEINTMFENVRMLEVKLRLSNQKLRVTEQLLSEKEESFRKAEEKFQQEQKALEDMIATLSVKLAANNEAFQEIIAGVKECVNSVTVGIETVCWKFSDKCKNHENSISNMSRELQVAKNGFREMNKEKEQLQTQRHQLLEQLRDKKEEELALRERIEKLEAKASKDESEKTNLAANMAQLRNTVGELEKKMKEKDDGMLDLGEEKREAIRQLCLWIDYHRSRYDYLKDVLSKTGRGQRTA* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3314 1275 Coils Coil 986 1006 - -
Amo13g3314 1275 Coils Coil 663 746 - -
Amo13g3314 1275 Coils Coil 364 419 - -
Amo13g3314 1275 PANTHER COP1-INTERACTIVE PROTEIN 1 342 835 - -
Amo13g3314 1275 PANTHER COP1-INTERACTIVE PROTEIN 1 1 342 - -
Amo13g3314 1275 PANTHER COP1-INTERACTIVE PROTEIN 1 831 1273 - -
Amo13g3314 1275 Coils Coil 800 869 - -
Amo13g3314 1275 PANTHER COP1-INTERACTIVE PROTEIN 1 342 835 - -
Amo13g3314 1275 PANTHER COP1-INTERACTIVE PROTEIN 1 1 342 - -
Amo13g3314 1275 PANTHER COP1-INTERACTIVE PROTEIN 1 831 1273 - -
Amo13g3314 1275 Coils Coil 1060 1094 - -
Amo13g3314 1275 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 89 IPR011684 GO:0003779
Amo13g3314 1275 MobiDBLite consensus disorder prediction 91 124 - -
Amo13g3314 1275 Pfam KIP1-like protein 14 83 IPR011684 GO:0003779
Amo13g3314 1275 Coils Coil 947 967 - -
Amo13g3314 1275 Coils Coil 761 784 - -
Amo13g3314 1275 Coils Coil 592 651 - -
Amo13g3314 1275 Coils Coil 280 349 - -
Amo13g3314 1275 Coils Coil 898 932 - -
Amo13g3314 1275 Coils Coil 189 244 - -
Amo13g3314 1275 Coils Coil 133 181 - -
Amo13g3314 1275 Coils Coil 1142 1232 - -
Amo13g3314 1275 Coils Coil 427 577 - -
Amo13g3314 1275 Coils Coil 1011 1045 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3314 Amo-Chr13 106310131 106318934 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3314 - - adu:107479777 2328.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3314 13 106310131 106318934 Amo13g3314 13 106310131 106318934 ECH
Amo13g3314 13 106310131 106318934 Amo03g2321 03 97282180 97288475 hybridization
Amo05g2386 05 51267280 51269048 Amo13g3314 13 106310131 106318934 PCT