Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2386 ATGGTGAAACATCGGTTGAGAGATTCTATGAAATCTTTATTTAAAAGCTACATCGACCCTGAAAAGGAAGCGCAGCTGAAAGGAGCTAAAGGAGAAATTCAAGAGAAGGTGAAAAGAATATTGAAACTTGTTAAAGATGAACATCTTGAAGAGGATGATGCTCCATTAGAACTTTCTAAGAAGGAATCACTTGTTAAATTGATAGAGGATTTCCACAGTCAATACCAATCACTCTATGCAAAGTATGATAATCTAACAGATGAGTTGAGGAAAAAGATCATTGGCAAGAAAGGAAAGGAGAGTTTTTCTTCCAGCTCAGACTCGGATTCTGATTATTCTTCAATGGACAAAGACAGCAAAAATGGACAACTGGAAAATGAATTTCAAAAGACAATTAATGGCATGAAGCAAGAACTTCGAACAGCACAGATGGAAGTTGCGGAATTAAATCAGAAGTTGACAGTGACAAGTGAAGAGAAACAGGATCTAATGAAGAAACTTGAAAGTACTGAGAATGAGTCGTCTTCTAAAATAGCAGATTTGTCATCTCAAATAAACAATCTGCTGGCCGAAATGGGTAAACTACATGCTCAGAAAACTGAAACGGAGGAAGAGATGAACAAAGCTACAGCACAAATGATGGTGCTCACTACCCAAGTTAACAACCTGCAAAGAGACTTACTATTGTTGCAGAAAGAGAAAGAAGAACGAGAAAATGCATATGAGAAGTTAAATGAAGAGTATGTGCAAGTAGATAATTGGTATAAGGAATGCAAGGCGAAACTAGAAGCGGCAGAGAAGAAGATCCAAGTAATGACAGAAGAATTTCATGAAGGCATTGGCTCAAAGGACCAGATGATAGCAGATTTGGAACAAACAACAGAAGACTTGAAAAGAGACCTTGAAGAGAAAGGAGATGAAATTAATACTTTACATGAGAATATTAGCATCCTTGAGGTTAAGCTTCGTATGTCAAACCAAAAGCTCCGGGTTGCTGATCAATTGCTAAGTGAGAAAGAGGAGGGCTTCAGGAAAGCAGAAGAGAAGTTCCATAACGATCAGAGATCACTTGAAGAGAGGATTGCCAAATTGTCAGCAACTATTGCTATTCAGGAGGATGCTTATCAGGAAATTGTGTTTGGCATTAAAGAAAGTGTGAACAGTGTGATGACTGGAACCAAAAATATTATGTGGAAATTTGAGGATGAGTGTAAAAATTATGAGAACTATATCTCAAACATGTCACATGAGCTTCACATTGCAAGGAACTWTGTCAGGGAGATGAACAAGGAAAAAGTGCAACTGAAGGAGAAAATAAACCATTTGGAGGAGCAACTACAGGATAAAAAGAAGCAGGAGTTGGATTTGAGGCAGATGGTGAAGAAGTTAGATGAAAAGGCAAGAGAGGAGGAACTAGCGAAGAAGAATCTAAGGACAAATGTTTTTCAACTTGAGAATACTATTGGAGAGCTACAAAAATTGGTGAAAGAGAAAGACCAAGGTATATTGAAGTTGGCTGAGGAGAAGAGGGAGGCCATTAGGCAGCTGTGTCTGGGAATCGATTATCATCGCAGTCGTTATAACACTCTCATGGACGTTGTATCAAGGACTCGCAGAGGCTAG 1623 0.3851 MVKHRLRDSMKSLFKSYIDPEKEAQLKGAKGEIQEKVKRILKLVKDEHLEEDDAPLELSKKESLVKLIEDFHSQYQSLYAKYDNLTDELRKKIIGKKGKESFSSSSDSDSDYSSMDKDSKNGQLENEFQKTINGMKQELRTAQMEVAELNQKLTVTSEEKQDLMKKLESTENESSSKIADLSSQINNLLAEMGKLHAQKTETEEEMNKATAQMMVLTTQVNNLQRDLLLLQKEKEERENAYEKLNEEYVQVDNWYKECKAKLEAAEKKIQVMTEEFHEGIGSKDQMIADLEQTTEDLKRDLEEKGDEINTLHENISILEVKLRMSNQKLRVADQLLSEKEEGFRKAEEKFHNDQRSLEERIAKLSATIAIQEDAYQEIVFGIKESVNSVMTGTKNIMWKFEDECKNYENYISNMSHELHIARNXVREMNKEKVQLKEKINHLEEQLQDKKKQELDLRQMVKKLDEKAREEELAKKNLRTNVFQLENTIGELQKLVKEKDQGILKLAEEKREAIRQLCLGIDYHRSRYNTLMDVVSRTRRG* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2386 540 Pfam KIP1-like protein 14 83 IPR011684 GO:0003779
Amo05g2386 540 Coils Coil 178 250 - -
Amo05g2386 540 Coils Coil 68 88 - -
Amo05g2386 540 Coils Coil 255 275 - -
Amo05g2386 540 Coils Coil 425 511 - -
Amo05g2386 540 MobiDBLite consensus disorder prediction 99 130 - -
Amo05g2386 540 Coils Coil 354 374 - -
Amo05g2386 540 Gene3D - 205 384 - -
Amo05g2386 540 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 270 332 IPR000727 -
Amo05g2386 540 Coils Coil 125 173 - -
Amo05g2386 540 Coils Coil 283 314 - -
Amo05g2386 540 Coils Coil 411 423 - -
Amo05g2386 540 PANTHER COP1-INTERACTIVE PROTEIN 1 1 163 - -
Amo05g2386 540 PANTHER COP1-INTERACTIVE PROTEIN 1 231 538 - -
Amo05g2386 540 PANTHER COP1-INTERACTIVE PROTEIN 1 162 237 - -
Amo05g2386 540 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 89 IPR011684 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2386 Amo-Chr5 51267280 51269048 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2386 - - aip:107643113 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2386 05 51267280 51269048 Amo13g3314 13 106310131 106318934 PCT
Amo05g2386 05 51267280 51269048 Amo03g2321 03 97282180 97288475 PCT