Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2848 ATGGCATCACCATCAAAGCCTAGGTCTCCCTTTGGTTGCTTTGTTATTTCCATAACCTTGGTTCATTTCATTGCTTCAATAACGAGTTTAGGCACATGCCAAAGTCTCGTAGAAGAGAGTAGTACTAGTGATGACACTAATACTAAAGCCTTTTTCATCTTTGGCGACTCTACAGTGGATTCAGGGAACAACAACTACATAGATACTGTTCCGGAGAACAGAGCTAATTACAAACCATATGGGCAAAATGGGTATTTTAAAGAACCCACAGGACGTTTCTCAGATGGCCGTGTTATTGTGGATTTTATAGGTGAGTATGAAAAGCTGCCACTAGTCCCTGCATTTTTACAGCCAAATGCTGATTATACCAATGGTGTCAACTTTGCTTCTGGTGGGGCTGGTGTTCTTGCTGAAACCAATCAGGGAATGGTGATTGATCTTCCAACACAACTAAGGAACTTTGAAGAGGTGAGAGTGTCACTATCAGAAAAGCTTGGGGAGAAGAAGGCAAAGGAGTTAATCTCAGAAGCAATTTATTTCATTAGCATAGGTAGCAACGATTACATGGGTGGTTATTTGGGTAACCCCAAAATGCAAGAAAGCTACAACCCTGAACAATATGTGGGGATGGTCATTGGAAACTTGACACAAGCAATCCAAGTACTATATGAGAAAGGGGCTAGAAAATTTGGATTTTTAAGTTTGTCTCCATTGGGATGCTTACCAGCCCTCAGAGCTCTAAACTCAAAATCCGACAAAGGTGGCTGCTTTGAAGCAGCTTCTGCTCTTGCTCAAGCTCATAATCATGCTTTGAGTAGTGTTCTCAAAAGCCTTGAGCAAATCCTTGAAGGGTTTAAGTATTCTAACTCCAATTTCTACGATTGGCTTCAAGAGAGAATAAGTAACCCCACCAATCATGGTTTTAAGGATGGAATCAATGCTTGCTGCGGAAGTGGGGCATATGGGGGTGTTTTCAGTTGTGGAGGCACCAAAGAAGTTGAAGATTACGAATTGTGTGAAAATGTTGGTGACTACGTATGGTGGGATTCATTCCACCCAACAGAGAAGATCCATGAGCAATTTGCCAAAACTTTATGGAATGGACCACATTCCTCAGTTGGACCCTATAATTTAAAGAGACTCTTCTCTAACATTAAGGTAATCAAGGCCCGCACTATAGCTGATGTAGTTGACAGACAAGAGACCGGTGAGCAAGGAATATTTCAGCAGTGA 1233 0.4169 MASPSKPRSPFGCFVISITLVHFIASITSLGTCQSLVEESSTSDDTNTKAFFIFGDSTVDSGNNNYIDTVPENRANYKPYGQNGYFKEPTGRFSDGRVIVDFIGEYEKLPLVPAFLQPNADYTNGVNFASGGAGVLAETNQGMVIDLPTQLRNFEEVRVSLSEKLGEKKAKELISEAIYFISIGSNDYMGGYLGNPKMQESYNPEQYVGMVIGNLTQAIQVLYEKGARKFGFLSLSPLGCLPALRALNSKSDKGGCFEAASALAQAHNHALSSVLKSLEQILEGFKYSNSNFYDWLQERISNPTNHGFKDGINACCGSGAYGGVFSCGGTKEVEDYELCENVGDYVWWDSFHPTEKIHEQFAKTLWNGPHSSVGPYNLKRLFSNIKVIKARTIADVVDRQETGEQGIFQQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2848 410 Pfam GDSL-like Lipase/Acylhydrolase 52 363 IPR001087 GO:0016788
Amo13g2848 410 CDD SGNH_plant_lipase_like 50 369 IPR035669 -
Amo13g2848 410 SUPERFAMILY SGNH hydrolase 51 367 - -
Amo13g2848 410 Gene3D SGNH hydrolase 37 369 IPR036514 -
Amo13g2848 410 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 9 395 - -
Amo13g2848 410 PANTHER - 9 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2848 Amo-Chr13 62445279 62454784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2848 50 382 Acyl Lipid Metabolism Gene Families AT4G10950 31.176 2.50e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2848 - - aip:107630589 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2848 13 62445279 62454784 Amo13g2848 13 62445279 62454784 ECH
Amo13g2848 13 62445279 62454784 Amo03g1586 03 43452566 43462780 hybridization