Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1586 ATGGCATCACCATCAAAGCCTAGTTCTCCATTTCGTTGCTTTGTTATTTCCATAACCCTGGTTCATTTCATTGCTTCAATAATGAGTTTAGGCACATGCCAAAGTCTCGTAGAAGAGAATAGTACTAGTGATGACACTACTACTAAAGCCTTTTTCATCTTTGGAGACTCTACAGTGGATTCAGGGAACAACAACTACATAGATACTGTTCCGGAGAACAGAGCTAATTACAAACCATATGGGCAAAACGGGTATTTTAAAGAACCCACAGGACGTTTCTCAGATGGCCGTGTTATTGTGGATTTTATAGGTGAGTATGAAAAGCTGCCACTAGTCCCTGCATTTTTACAGCCAAATGCTGATTATACCAATGGTGTCAACTTTGCTTCTGGTGGGGCTGGTGTTCTTGCTGAAACCAATCAGGGAGTGGTGATTGATCTTCCAACACAACTAAGGAACTTTGAAGAGGTGAGAGTGTCACTATCAGAAAAGCTTGGGGAGAAGAAGGCAAAGGAGTTAATCTCAGAAGCAATTTATTTCATTAGCATAGGTAGCAACGATTACATGGGTGGTTATTTGGGTAACCCAAAAATGCAAGAAAGCTACAACCCTGAACAATATGTGGGGATGGTCATTGGAAACTTGACACAAGCAATCCAAGTACTATATGAGAAAGGGGCTAGAAAATTTGGATTTTTAAGTTTGTCTCCATTGGGATGCTTACCAGCCCTCAGAGCTCTAAACTCAAAATCCGACAAAGGTGGCTGCTTTGAAGCAGCTTCTGCTCTTGCTCAAGCTCATAATCATGCTTTGAGTAGTGTTCTCAAAAGCCTTGAGCAAATCCTTGAAGGGTTTAAGTATTCTAACTCCAATTTCTACGATTGGCTTCAAGAGAGAATAAGTAACCCCACCAATCATGGTTTTAAGGATGGAATCAATGCTTGCTGCGGAAGTGGGCCATATGGGGGTGTTTTCAGTTGTGGAGGCACCAAAGAAGTTGAAGATTACGAATTGTGTGAAAATGTTGGTGACTACGTATGGTGGGATTCATTCCACCCAACAGAGAAGATCCATCAGCAATTTGCCAAAACTTTATGGAATGGACCACATTCCTCAGTTGGACCCTATAATTTAAAGAGACTCTTCTCTAACATTAAGGTAATCAAGGCCCACACTATAGCTGATGTAGTTGACAGACGAGAGACCGGTGGAGAGGGAATATTTCAGTAG 1230 0.4154 MASPSKPSSPFRCFVISITLVHFIASIMSLGTCQSLVEENSTSDDTTTKAFFIFGDSTVDSGNNNYIDTVPENRANYKPYGQNGYFKEPTGRFSDGRVIVDFIGEYEKLPLVPAFLQPNADYTNGVNFASGGAGVLAETNQGVVIDLPTQLRNFEEVRVSLSEKLGEKKAKELISEAIYFISIGSNDYMGGYLGNPKMQESYNPEQYVGMVIGNLTQAIQVLYEKGARKFGFLSLSPLGCLPALRALNSKSDKGGCFEAASALAQAHNHALSSVLKSLEQILEGFKYSNSNFYDWLQERISNPTNHGFKDGINACCGSGPYGGVFSCGGTKEVEDYELCENVGDYVWWDSFHPTEKIHQQFAKTLWNGPHSSVGPYNLKRLFSNIKVIKAHTIADVVDRRETGGEGIFQ* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1586 409 Pfam GDSL-like Lipase/Acylhydrolase 52 363 IPR001087 GO:0016788
Amo03g1586 409 Gene3D SGNH hydrolase 37 369 IPR036514 -
Amo03g1586 409 CDD SGNH_plant_lipase_like 50 369 IPR035669 -
Amo03g1586 409 PANTHER - 8 395 - -
Amo03g1586 409 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 8 395 - -
Amo03g1586 409 SUPERFAMILY SGNH hydrolase 51 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1586 Amo-Chr3 43452566 43462780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1586 50 382 Acyl Lipid Metabolism Gene Families AT4G10950 31.176 1.07e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1586 - - aip:107630589 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2848 13 62445279 62454784 Amo03g1586 03 43452566 43462780 hybridization