Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2208 ATGAAGATTATTATTATTATGATTGGTATGTTTGTGTGCCTGATAGCACAGCTCTCTGTGAAGGTAGAATCAATAAGCAGAACAGATTTTCCAGATGGGTTTATTTTTGGAACTGCTTCTTCAGCTTTCCAGTTTGAAGGAGCTGTAGATGAAGGAAACAAAGGAGATAGCATATGGGATACCTTCTCAAGAATTCCAGGAAGAATATTGGACTTCAGTAATGCAGACACGGCTGTGGATCAATATCACCGATTTCAGGATGATATTGACTTGATGAAGGATTTGGGAATGGACTCTTACAGATTTTCCATATCTTGGTCAAGAATTTTCCCAAATGGATCAGGGGAACCAAATGCAGAGGGAATAAAATATTATAACAGCTTCATTGATGCTTTGCTGAAGAAAGGAATCCAGCCTTTTGTAACTCTATATCATTGGGATCTTCCACAGATGCTTGAAGATCAATATGAAGGATGGATTAGCACACAAGTAATAAAAGATTTTGAGCATTATGCCTATACCTGCTTCGAAGCTTTTGGTGACAGAGTTAAGCATTGGATTACTTTCAACGAACCGCATAATTTCGCACTCCATGGGTACGATTTAGGCATTCAAGCACCTGGAAGGTGTTCRCTTTTGGGCCATCTTATATGTAAGAAGGGAAAATCATCAACTGAACCATACATTGTTGCTCACAACATTCTTCTATCTCATGCTGCTGCCTATCATTGTTACCAAATGCATTTTAAGGAAAGACAAGGAGGTGAAGTAGGAATAGCATTAGATGCTGTTTGGTATGAACCAATAACTGATCTTGATGAAGACAAAGATGCAGCATCAAGAGCCATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAARTATCCTCAAACAATGCAAGAACTTGTAGCTGAGAGATTACCAGAGATTTCTGATGCAGACTCAAACTTTCTTGTGGGATCCTTAGATTTTATTGGCATAAATCACTATACATCGATATATACTCGTAATGACAGGACCAGGATTCATAAATTCATAATGCAAGATGCTTCATCTGATGCAGCTGTCATTACAACTGCATACCGCAAAGGAGCTATAATTGGAGAAAGGGTATGCTCAAAAGAAAAATTCAAGGCAGCATCAAGTTGGCTGCACATTGTGCCATGGGGCATCCGAAAGATAGTAAATTATGTGAATAGAAAATATGGTAACACACCTATAATTATAACAGAAAATGGAATGGATGACTCTAACATTATACCCTTTACGACCTTAGATAAGGCCTTAAATGATGAAAAGAGGATAAATTATCACCGGGACTATCTCTCTAATTTATCTGCAGCTATAAGGGAAGATGGCTGCAATGTTAAAGGTTACTTTGTGTGGTCGTTGCTTGACAATTGGGAATGGAATTCGGGCTACACTGTCCGGTTTGGACTTTACTACGTGGATTACAAGAATAACCTTACTAGGATACCGAAAGCTTCGGTGACATGGTTCAAAAACATGCTCAGATTAGAACGAGAAATGACAAGTCAAAGTTAA 1557 0.3841 MKIIIIMIGMFVCLIAQLSVKVESISRTDFPDGFIFGTASSAFQFEGAVDEGNKGDSIWDTFSRIPGRILDFSNADTAVDQYHRFQDDIDLMKDLGMDSYRFSISWSRIFPNGSGEPNAEGIKYYNSFIDALLKKGIQPFVTLYHWDLPQMLEDQYEGWISTQVIKDFEHYAYTCFEAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLICKKGKSSTEPYIVAHNILLSHAAAYHCYQMHFKERQGGEVGIALDAVWYEPITDLDEDKDAASRAMDFSLGWFLDPLFFGKYPQTMQELVAERLPEISDADSNFLVGSLDFIGINHYTSIYTRNDRTRIHKFIMQDASSDAAVITTAYRKGAIIGERVCSKEKFKAASSWLHIVPWGIRKIVNYVNRKYGNTPIIITENGMDDSNIIPFTTLDKALNDEKRINYHRDYLSNLSAAIREDGCNVKGYFVWSLLDNWEWNSGYTVRFGLYYVDYKNNLTRIPKASVTWFKNMLRLEREMTSQS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2208 518 Gene3D Glycosidases 15 509 - -
Amo13g2208 518 PANTHER GLYCOSYL HYDROLASE 15 509 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 Pfam Glycosyl hydrolase family 1 28 509 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 SUPERFAMILY (Trans)glycosidases 16 509 IPR017853 -
Amo13g2208 518 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 34 48 IPR033132 -
Amo13g2208 518 PRINTS Glycosyl hydrolase family 1 signature 435 446 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 PRINTS Glycosyl hydrolase family 1 signature 481 493 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 PRINTS Glycosyl hydrolase family 1 signature 411 419 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 PRINTS Glycosyl hydrolase family 1 signature 325 339 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 PRINTS Glycosyl hydrolase family 1 signature 457 474 IPR001360 GO:0004553|GO:0005975
Amo13g2208 518 PANTHER BETA-GLUCOSIDASE 41-RELATED 15 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2208 Amo-Chr13 37028766 37034187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2208 20 454 Glycoside Hydrolase AT5G54570 71.101 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2208 K01188 - gmx:100783543 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2208 13 37028766 37034187 Amo13g2208 13 37028766 37034187 ECH
Amo13g2208 13 37028766 37034187 Amo03g0297 03 5633967 5639138 hybridization