Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0297 ATGAAGATTATTATTATTATGATTGGTATGTTTGTGTGCCTGATAGCACAGCTCTCTGTGAAGGTAGAATCAATAAGCAGAACAGATTTTCCAGATGGGTTTATTTTTGGAACTGCTTCTTCAGCTTTCCAGTTTGAAGGAGCTGTAGATGAAGGAAACAAAGGAGATAGCATATGGGATACCTTCTCAAGAATTCCAGGAAGAATATTGGACTTCAGTAATGCAGACACGGCTGTGGATCAATATCACCGATTTCAGGATGATATTGACTTGATGAAGGATTTGGGAATGGACTCTTACAGATTTTCCATATCTTGGTCAAGAATTTTCCCAAATGGATCAGGGGAACCAAATGCAGAGGGAATAAAATATTATAACAGCTTCATTGATGCTTTGCTGAAGAAAGGAATCCAGCCTTTTGTAACTCTATATCATTGGGATCTTCCACAGATGCTTGAAGATCAATATGAAGGATGGATTAGCACACAAGTAATAAAAGATTTTGAGCATTATGCCTATACCTGCTTTGAAGCTTTTGGTGACAGAGTTAAGCATTGGATTACTTTCAACGAACCGCATAATTTCGCACTCCATGGGTACGATTTAGGCATTCAAGCACCTGGAAGGTGTTCYCTTTTGGGCCATCTTATATGTAAGAAGGGAAAATCATCAACTGAACCATACATTGTTGCTCACAACATTCTTCTATCTCATGCTGCTGCCTATCATTGTTACCAAATGCATTTTAAGGAAAGACAAGGAGGTCAAGTAGGAATAGCATTAGATGCTGTTTGGTATGAACCAATAACTGATCTTGATGAAGACAAAGATGCAGCATCAAGAGCCATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAAYTATCCTCAAACAATGCAAGAACTTGTAGCTGAGAGATTACCAGAGATTTCTGATGCAGACTCAAACTTTCTTGTGGGATCCTTAGATTTTATTGGCATAAATCACTATACATCGATATATACTCGTAACGACAGGACCAGGATTCATAAATTCATAATGCAAGATGCTTCATCTGATGCAGCTGTCATTACAACTGCATACCGCAAAGGAGCTATAATTGGAGAAAGGGCAGCATCAAGTTGGCTGCACATTGTTCCATGGGGCATCCGAAAGATAGTAAATTATGTGAATAGCAAATATGGTAACACACCTATAATTATAACAGAAAATGGAATGGATGACTCTAACATTATACCCTTTACGACCTTAGATAAGGCCTTAAATGATGAAAAGAGGATAAATTATCACCGGGACTATCTCTCTAATTTATCTGCAGCTATAAGGGAAGATGGCTGCAATGTTAAAGGTTACTTTGTGTGGTCGTTGCTTGACAATTGGGAATGGAATTCGGGCTACACTGTCCGGTTTGGACTCTACTACGTGGATTACAAGAATAACCTTACTAGGATACCGAAAGCTTCGGTGACATGGTTCAAAAACATGCTCAGATTAGAACGAGAAATGACAAGTCAAAGTTAA 1533 0.3862 MKIIIIMIGMFVCLIAQLSVKVESISRTDFPDGFIFGTASSAFQFEGAVDEGNKGDSIWDTFSRIPGRILDFSNADTAVDQYHRFQDDIDLMKDLGMDSYRFSISWSRIFPNGSGEPNAEGIKYYNSFIDALLKKGIQPFVTLYHWDLPQMLEDQYEGWISTQVIKDFEHYAYTCFEAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLICKKGKSSTEPYIVAHNILLSHAAAYHCYQMHFKERQGGQVGIALDAVWYEPITDLDEDKDAASRAMDFSLGWFLDPLFFGNYPQTMQELVAERLPEISDADSNFLVGSLDFIGINHYTSIYTRNDRTRIHKFIMQDASSDAAVITTAYRKGAIIGERAASSWLHIVPWGIRKIVNYVNSKYGNTPIIITENGMDDSNIIPFTTLDKALNDEKRINYHRDYLSNLSAAIREDGCNVKGYFVWSLLDNWEWNSGYTVRFGLYYVDYKNNLTRIPKASVTWFKNMLRLEREMTSQS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0297 510 PANTHER BETA-GLUCOSIDASE 41-RELATED 15 501 - -
Amo03g0297 510 PANTHER GLYCOSYL HYDROLASE 15 501 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 PRINTS Glycosyl hydrolase family 1 signature 325 339 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 PRINTS Glycosyl hydrolase family 1 signature 427 438 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 PRINTS Glycosyl hydrolase family 1 signature 403 411 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 PRINTS Glycosyl hydrolase family 1 signature 449 466 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 PRINTS Glycosyl hydrolase family 1 signature 473 485 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 34 48 IPR033132 -
Amo03g0297 510 Pfam Glycosyl hydrolase family 1 28 501 IPR001360 GO:0004553|GO:0005975
Amo03g0297 510 Gene3D Glycosidases 15 501 - -
Amo03g0297 510 SUPERFAMILY (Trans)glycosidases 23 500 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0297 Amo-Chr3 5633967 5639138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0297 20 446 Glycoside Hydrolase AT5G54570 72.664 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0297 K01188 - gmx:100783543 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2208 13 37028766 37034187 Amo03g0297 03 5633967 5639138 hybridization