Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1989 ATGATAACATCCATAGTTAGCCTTATAGTGTTACACAGAACCGTACAATASCCTTCAATTCCTACACATAACATCCTCGGCTCCCTAATGCCACAGCGACAAGAAACTTTGATGGAACCAACAATGAACAATGGCAATGGCCATGGACATGGCTGTGCTATTGTGAATGGAAGAAGCAGAACCAATAATTGTACTAGTGATGAAGTAATTGAGTGGTTTGAACAAGTGTCACAGAAGGGTGGTTCTGTTCAGAAAGAGATACTATCCCAGATTCTGAAACAGAACCATGGTGCTGAGTATGTGAAGAAATGGTYGGGGTATCACAACATCCAAGAAATGGATTCATCTGCATTGGAATCACTTTTCACTTCTGTGGGAAGGCAGAAGTTCGTACCTTTTACCCGCCATAGTGCACAAACTACCCTTCAAATTTTTACCTTAGCAGCAGCATACAGATCAAGGGTTTATCCCATAAGAGAAGGAGGAAAGATTCTTGAATTCATATACAGCAGCAACACGTTCAAAACAAAAGGAGGCCTAACGGTAGGAACAGCCACAACACACTACTATGCAAGTGAAGAGTTCAAGATCAAACAAGAACAAACAAAATCTTTCACTTGTAGCCCGGCCGAAGTMATTTCCGGCGGGGACTACAAGCAATCGACATACTGCCACCTCCTCCTCGGCCTCTTCTTCTCCGACCAAGTCGAATTTATAACCTCTGCTTTTGTCTACAGCATAATCCAAGCATTTCGCAGCTTCCAGGAGCTTTGGTGTGAGATATGCAACGATRTTAGATCCGGCTCGCTTAGCTCGCGAATTAAGTTGCCAAAGATGAGAAAGGCAGTTTTGGAAATCATTRGTCCAAACCCAATTTTGGCATCAAAATTGGAAAATATTTGCAAGGAGCTAGAATTGGTGGATTGGTTTGGTTTGATTCCAAAGCTTTGGCCAAATGCTAAGTATGTTTATTCAATAATGACAGGGTCTATGCTACCTTATGTGACAAAGCTTAGGCATTATGCAAATGGATTACCTTTGGTTAGTGCTGATTATGGGTCAACTGAGAGTTGGATTGGGGTTAATGTGGATCCAAGTTTGCCACCAGAGAAAGTAACATTCACCGTTGTTCCTACTTTCTCTTACTTTGAGTTCATTCCACTTTATAGACATAATAAGCAAGAAGATTACAGATCAATTGTTGCTGATGATTTTATTGAAGACAAGCCAATTCCACTTTCTCAGGTTAAAGCAGGACAAGAGTATGAAATTGTCCTTACAACTTTCACCGGACTATACAGGTGCAGATTAGGAGATGTGGTAGAGGTGGCAGGATTCCACAACGGGATCCCAAAACTGAACTTCGTATGCAGAAGGAAGTTAATTCTAACTGTAAACATAGACAAGAACACAGAGAAGGACCTCCAATTAGTAGTAGAGAGAGGGTCACAACTTCTGAACAGAGCAAAGAAAGCTGAGCTTGTTGACTTCACCAGCTACGCTCATGTCTCCAACGAACCCGGCCATTACGTGATCTTCTGGGAGATCGACGGTTACGCCGAGGACAGTTTGTTAGAGGCGTGTTGCACCGAGATGGACGCGTCGTTTGCCGATCACGGTTACGTGGTTTCTAGAAAGACCAAGTCAATAGGGCCCCTTGAGCTTTGCATTGTGGAGAGGGGAACATTCAAGAAGATTCTGGACAACTTCATTGCTAATGGGGCTGCTTTGAGCCAGTTCAAGACTCCTAGGTGCACTAGTAACCATGGCATGCTTAATATCCTTAGGGCTTGCGCCCTCAAGAAGTTTCGTAGCACTGCTTACAACACTTGA 1833 0.4299 MITSIVSLIVLHRTVQXPSIPTHNILGSLMPQRQETLMEPTMNNGNGHGHGCAIVNGRSRTNNCTSDEVIEWFEQVSQKGGSVQKEILSQILKQNHGAEYVKKWXGYHNIQEMDSSALESLFTSVGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGKILEFIYSSNTFKTKGGLTVGTATTHYYASEEFKIKQEQTKSFTCSPAEVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSIIQAFRSFQELWCEICNDXRSGSLSSRIKLPKMRKAVLEIIXPNPILASKLENICKELELVDWFGLIPKLWPNAKYVYSIMTGSMLPYVTKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPEKVTFTVVPTFSYFEFIPLYRHNKQEDYRSIVADDFIEDKPIPLSQVKAGQEYEIVLTTFTGLYRCRLGDVVEVAGFHNGIPKLNFVCRRKLILTVNIDKNTEKDLQLVVERGSQLLNRAKKAELVDFTSYAHVSNEPGHYVIFWEIDGYAEDSLLEACCTEMDASFADHGYVVSRKTKSIGPLELCIVERGTFKKILDNFIANGAALSQFKTPRCTSNHGMLNILRACALKKFRSTAYNT* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1989 610 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 123 609 IPR004993 -
Amo13g1989 610 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 123 609 - -
Amo13g1989 610 Pfam GH3 auxin-responsive promoter 123 588 IPR004993 -
Amo13g1989 610 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 64 125 - -
Amo13g1989 610 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 64 125 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1989 Amo-Chr13 30176633 30185228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1989 123 606 EF-hand Containing Proteins AT1G23160 36.145 1.15e-96 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1989 K14487 - gmx:100813472 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1989 13 30176633 30185228 Amo13g1989 13 30176633 30185228 ECH
Amo13g1989 13 30176633 30185228 Amo03g0620 03 11463745 11474055 hybridization