Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0620 ATGGTCGATAATTCAAGCATATTATGGATGCTTACTTGCAAAAGGAGTCAAGCCATACAAAGAAAGCACAATCTTAAATCAAATTTAGTTCAAACAAGACTCCACTTAGGCATGCAGCCATCAAACAAGCTTTTACATATGACTTACAAAATACTGCAAAAGGGAAGGCAGAAGTTCGTACCTTTTACCCGCCATAGTGCACAAACTACCCTTCAAATTTTTACCTTAGCAGCAGCATACAGATCAAGGGTTTATCCCATAAGAGAAGGAGGAAAGATTCTTGAATTCATATACAGCAGCAACACGTTCAAAACAAAAGGAGGCCTAACGGTAGGAACAGCCACAACACACTACTATGCAAGTGAAGAGTTCAAGATCAAACAAGAACAAACAAAATCTTTCACTTGTAGCCCGGCCGAAGTCATTTCCGGCGGGGACTACAAGCAATCGACATACTGCCACCTCCTCCTCGGCCTCTTCTTCTCCGACCAAGTCGAATTTATAACCTCTGCTTTTGTCTACAGCATAATCCAAGCATTTCGCAGCTTCCAGGAGCTTTGGTGTGAGATATGCAACGATGTTAGATCCGGCTCGCTTAGCTCGCGAATTAAGTTGCCAAAGATGAGAAAGGCAGTTTTGGAAATCATTAGTCCAAACCCAATTTTGGCATCAAAATTGGAAAATATTTGCAAGGAGCTAGAATTGGTGGATTGGTTTGGTTTGATTCCAAAGCTTTGGCCAAATGCTAAGTATGTTTATTCAATAATGACAGGGTCTATGCTACCTTATGTGACAAAGCTTAGGCATTATGCAAATGGATTACCTTTGGTTAGTGCTGATTATGGGTCAACTGAGAGTTGGATTGGGGTTAATGTGGATCCAAGTTTGCCACCAGAGAAAGTAACATTCACCGTTGTTCCTACTTTCTCTTACTTTGAGTTCATTCCACTTTATAGACATAATAAGCAAGAAGATTACAGATCAATTATTGCTGATGATTTTATTGAAGACAAGCCAATTCCACTTTCTCAGGTTAAAGCAGGACAAGAGTATGAAATTGTCCTTACAACTTTCACCGGACTATACAGGTGCAGATTAGGAGATGTGGTAGAGGTGGCAGGATTCCACAACGGGACCCCAAAACTGAACTTCGTATGTAGAAGGAAATTAATTCTAACTGTAAACATAGACAAGAACACAGAGAAGGACCTCCAATTAGTAGTAGAGAAAGGGTCACAACTTCTGAAGAGAGCAAAGAAAGCTGAGCTTGTTGACTTCACCAGCTACGCTCATGTCTCCAACGAACCCGGCCACTACGTCATCTTCTGGGAGATCGACGGTTACGCCGAGGACAATTTGTTAGAGGCGTGTTGCACCGAGATGGACGCGTCGTTTGCCGATCACGGTTACGTGGTTTCTAGAAAGACCAAGTCAATAGGGCCCCTTGAGCTTTGCATTGTGGAGAGGGGAACATTCAAGAAGATTCTGGACAACTTCATTGCTAATGGTGCTGCTTTGAGCCAGTTCAAGACTCCTAGGTGCACTAGTAACCATGGCATGCTTAATATCCTTAGGGCTTGCGCTCTCAAGAAGTTTCGTAGCACTGCTTACAACACTTGA 1620 0.4247 MVDNSSILWMLTCKRSQAIQRKHNLKSNLVQTRLHLGMQPSNKLLHMTYKILQKGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGKILEFIYSSNTFKTKGGLTVGTATTHYYASEEFKIKQEQTKSFTCSPAEVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSIIQAFRSFQELWCEICNDVRSGSLSSRIKLPKMRKAVLEIISPNPILASKLENICKELELVDWFGLIPKLWPNAKYVYSIMTGSMLPYVTKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPEKVTFTVVPTFSYFEFIPLYRHNKQEDYRSIIADDFIEDKPIPLSQVKAGQEYEIVLTTFTGLYRCRLGDVVEVAGFHNGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVEKGSQLLKRAKKAELVDFTSYAHVSNEPGHYVIFWEIDGYAEDNLLEACCTEMDASFADHGYVVSRKTKSIGPLELCIVERGTFKKILDNFIANGAALSQFKTPRCTSNHGMLNILRACALKKFRSTAYNT* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0620 539 Pfam GH3 auxin-responsive promoter 55 517 IPR004993 -
Amo03g0620 539 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 54 538 - -
Amo03g0620 539 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 54 538 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0620 Amo-Chr3 11463745 11474055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0620 55 535 EF-hand Containing Proteins AT1G23160 35.960 1.61e-97 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0620 K14487 - gmx:100813472 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1989 13 30176633 30185228 Amo03g0620 03 11463745 11474055 hybridization