Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1944 ATGTTTAGTTTTTCTTGTTTCCATGCTCATGTTTCGGTCAACAAGCCAAAGAAAACAGTTCCACCTTATACTGAAGAAATGATGATGGCATTGAAAGGTGGTCCCCGAAGTAAAGTCTCTAAAGGTTCATCTGTTCCTAGAAAATCAAATCAATCAAATCCAAAAGAAGAACAAGAGTATATGCAATTGAGTGACAATGAAACATCTAGCAACTGGGATCCAGTTGAGCGCACTTGTAAGTCTGAGGATCTGAATAGCGAGTTTTCCTTTGAAATCGACGGAGATGTTCTGCAAACCATGGGTCTTAAGAAAAGCCACTCTCTTGAAACTGGACTATACCTCACTAATACCTTAACTGARTCTGRCAYACATGTKGGTTTTCCTTGGATTGACTCCACTAGAAGCCAGAATGAGTCYCCAAGATCGATTTGCAGAAAGGAGCATGATCCCAGCGATCAGTGTAACAAGAATCCCGAGTCGGAGTATCAGTTCAGTTCAGGTCTTGTCTCACCTTCAGATAGAGATGCTTGTGATCATTCTGATACACCATTATCTAGTGAATTAGCTGGTGACTATACYGAYCGTTCCGGTCCTGGCACCCCATATTTGAAGAAGTCACGCTCTCTGCCCAATGTCAGAGCTTCTAAGGATTATTCTGGAGAAGACACTTTCAAACATCATTCTTCAAAATCAAGATCTTCCAATGATCTTCATGCTTTASATATGGGGCAAAAAGAATGTAGAGATGAAGAAAGAGAGAATGAATTCAGAAAAGATAATGAGATTCATATGGAGAGTTATCTTGATGATGGTTTGGATTCTTCTCCGCTTTCTGATTCAGCAAAAGACTGGGTAATGCCAGTTATGGATGATGCAAGTGAAGTCAAACCCCTTCAACGAGCTTCCTCAGTTGATTGCTTCCTTTCTGAATTTACTAACACAGATTTTAAGATTAAACGAATTGAGGATTGGGTAATTGGTCTGGAGGATTGCGAACCGCCTTTAGATGAAACAAATGAGGTTCCTAAACCTGTTGATTCCTTAGTTGAATCCAACATCACGATTGGGGTGACTGCAGCTGGCACAGATCAAAGGGTCACTCCAGGCATGGAAGCTGCTAAAAGATATATATCTACCCTTGGTGCTAATGCCTCTACTGCCCAGCTGGTTAATCATGGATTAGTTGTGATCCCATTTCTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCCGGAAATGCTATTGTGAGGATAACTGCAGGTGCTCTTCCCCGGGGCCTTCATGTTTTGAACTTGTCAAGAAACAATATCTCTACTATAGAGGGATTACGCGAACTTACAAGACTTCGTGTCCTAGACCTTAGCTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGTTCATCTCTGAAGGAGCTGTATCTTGCTGGGAATAAGATCAGCGAAGTAGAGGGTCTGCACCGTCTCTTGAAGTTAACCATCCTTGATCTCCGTTTCAACAAAATTTCTACAGCCAAGTGTCTAGGCCAACTCGCATCCAACTATAATTCACTACAAGCTATCAGCTTGGAAGGCAACCCGAGCCAGAAAAATGTTGGGGACGAACAACTGAAAAAGTATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATAGACAGCCTTTAAAAGCAAGCTCTTTGAAGGATGGCACAGATCGTTCAGTTCGGCTAGGCATTGGTTCCCATCAGTCTGAACGCAGCCTTAGAACAGATCGCAAGACATCAAGGAAGGGCAGCCATGGTACTGTAGCCTCTCGGAAGCCATCAGGCTCTTCCTCACACTCTCGCAGAAGCCAAGGGGTGGAGACACCAAAACTGTCCAAAAGCAGGCAAGCCTACCTGCCACCAAGCAAAACCAAAGCATCAGCCCAAAGTCGCAACCATTTAGATGTTCCCAGCACCAGCACAGTACCAAACTTGAGAGGCCTTCCATGA 1986 0.4325 MFSFSCFHAHVSVNKPKKTVPPYTEEMMMALKGGPRSKVSKGSSVPRKSNQSNPKEEQEYMQLSDNETSSNWDPVERTCKSEDLNSEFSFEIDGDVLQTMGLKKSHSLETGLYLTNTLTESXXHVGFPWIDSTRSQNESPRSICRKEHDPSDQCNKNPESEYQFSSGLVSPSDRDACDHSDTPLSSELAGDYTDRSGPGTPYLKKSRSLPNVRASKDYSGEDTFKHHSSKSRSSNDLHALXMGQKECRDEERENEFRKDNEIHMESYLDDGLDSSPLSDSAKDWVMPVMDDASEVKPLQRASSVDCFLSEFTNTDFKIKRIEDWVIGLEDCEPPLDETNEVPKPVDSLVESNITIGVTAAGTDQRVTPGMEAAKRYISTLGANASTAQLVNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHVLNLSRNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTILDLRFNKISTAKCLGQLASNYNSLQAISLEGNPSQKNVGDEQLKKYLQGLLPHLVYYNRQPLKASSLKDGTDRSVRLGIGSHQSERSLRTDRKTSRKGSHGTVASRKPSGSSSHSRRSQGVETPKLSKSRQAYLPPSKTKASAQSRNHLDVPSTSTVPNLRGLP* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1944 661 SMART LRR_typ_2 447 470 IPR003591 -
Amo13g1944 661 SMART LRR_typ_2 492 514 IPR003591 -
Amo13g1944 661 SMART LRR_typ_2 403 426 IPR003591 -
Amo13g1944 661 MobiDBLite consensus disorder prediction 562 661 - -
Amo13g1944 661 ProSiteProfiles Leucine-rich repeat profile. 427 448 IPR001611 GO:0005515
Amo13g1944 661 Gene3D Ribonuclease Inhibitor 358 544 IPR032675 -
Amo13g1944 661 MobiDBLite consensus disorder prediction 156 170 - -
Amo13g1944 661 Pfam Leucine Rich repeat 494 506 IPR001611 GO:0005515
Amo13g1944 661 PANTHER NISCHARIN RELATED 6 652 - -
Amo13g1944 661 PANTHER BNAA09G01440D PROTEIN 6 652 - -
Amo13g1944 661 SUPERFAMILY Outer arm dynein light chain 1 397 557 - -
Amo13g1944 661 MobiDBLite consensus disorder prediction 140 155 - -
Amo13g1944 661 MobiDBLite consensus disorder prediction 42 75 - -
Amo13g1944 661 Pfam Leucine rich repeat 405 460 IPR001611 GO:0005515
Amo13g1944 661 ProSiteProfiles Leucine-rich repeat profile. 472 493 IPR001611 GO:0005515
Amo13g1944 661 MobiDBLite consensus disorder prediction 218 233 - -
Amo13g1944 661 MobiDBLite consensus disorder prediction 129 236 - -
Amo13g1944 661 MobiDBLite consensus disorder prediction 598 661 - -
Amo13g1944 661 ProSiteProfiles Leucine-rich repeat profile. 449 471 IPR001611 GO:0005515
Amo13g1944 661 MobiDBLite consensus disorder prediction 30 76 - -
Amo13g1944 661 SMART LRR_sd22_2 470 491 - -
Amo13g1944 661 SMART LRR_sd22_2 447 469 - -
Amo13g1944 661 SMART LRR_sd22_2 425 446 - -
Amo13g1944 661 SMART LRR_sd22_2 492 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1944 Amo-Chr13 29213774 29218088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1944 - - gmx:100790061 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1944 13 29213774 29218088 Amo03g0705 03 12946273 12950670 hybridization