Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0705 ATGTTTAGTTTTTCTTGTTTCCATGCTCATGTTTCGGTAAACAAGCCAAAGAAAACAGTTCCACCTTATACTGAAGAAATGATGATGGCATTGAAAGGTGGTCCCCGAAGTAAAGTCTCTAAAGGTTCATCTGTTCCTAGAAAATCAAATCCAAAAGCAGAACAAGAGCATATGCAATTGAGTGACAATGAAACATCTAGCAACTGGGATCCAGTTGAGCGCACTTGTAAGTCTGAGGATCTGAATAGCGAGTTTTCCTTTGAAATCGACGGAGATGTTCTGCAAACCATGGGTCTTAAGAAAAGCCACTCTCTTGAAACTGGACTATACCTCACTAATACCTTAACTGARTCTGRCAYACATGTKGGTTTTCCTTGGATTGACTCCACTAGAAGCCAGAATGAGTCYCCAAGATCGATTTGCAGAAAGGAGCATGATCCCAGCGATCAGTGTAACAAGAATCCCGAGTCGGAGTATCAGTTCAGTTCAGGTCTTGTCTCACCTTCAGATAGAGATGCTTGTGATCATTCTGATACACCATTATCTAGTGAATTAGCTGGTGACTATACYGAYCGTTCCGGTCCTGGCACCCCATATTTGAAGAAGTCACGCTCTCTGCCCAATGTCAGAGCTTCTAAGGATTATTCTGGAGAAGACACTTTCAAACATCATTCTTCAAAATCAAGATCTTCCAATGATCTTCATGCTTTAGATATGGGGCAAAAAGAATGTAGAGATGAAGAAAGAGAGAATGAATTCAGAAGAGATAATGAGATTCATATGGAGAGTTACCTTGATGATGGTTTGGATTCTTCTCCGCTTTCTGATTCAGCAAAAGACTGGGTAATGCCAGTTATGGATGATGCAAGTGAAATCAAACCCCTTCAACGAGCTTCCTCAGATGATTGCTTCCTTTCTGAATTTACTAACGCAGATTTTAAGATTAAACGAATTGAGGATTGGGTAATTGGTCTGGAGGATTGTGAACCACCTCTAGATGAAACAAATGAGGTTCCTAAACCTGTTGATTCCTTAGTTGAATCCAACATCACGATTGGGGTGACTGCAGCTGGCACAGATCAAAGGGCCACTCCAGGCATGGAAGCTGCTAAAAGATATATATCTACCCTTGGTGCTAATGCCTCTGCTGCCCAGCTGGTTAATCATGGATTAGTTGTGATCCCATTTCTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCTGGAAACGCTATTGTGAGGATAACTGCAGGTGCTCTTCCCCGGGGCCTTCATGTTTTGAACTTGTCAAGAAACAATATCTCTACTATAGAGGGATTACGCGAACTTACAAGACTTCGTGTCCTAGACCTTAGCTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGTTCATCTCTGAAGGAGCTGTATCTTGCCGGGAACAAGATCAGCGAAGTAGAGGGTCTACACCGTCTCTTGAAGTTAACCATCCTTGATCTCCGTTTCAACAAAATTTCTACAGCCAAGTGTCTAGGCCAACTTGCAGCCAACTATAATTCACTACAAGCTATCAGCTTGGAAGGCAACCCGAGCCAGAAAAATGTTGGGGACGAACAACTGAAAAAGTATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATAGACAGCCTTTAAAAGCAAGCTCTTTGAAGGATGGCACAGATCGTTCAGTTCGGCTAGGCATTAGTTCCCATCAGTCTGAACGCAGCCTTAGAACGGATCGCAAGACATCAAGGAAGGGCAGCCATGGTACTGTAGCCTCTCGGAAGCCATCAGCCTCTTCCTCACACCCTCGCAGAAGCCAAGGGGTGGAGACACCAAAACTGTCCAAAAGCAGGCAAGCCTACCCGCCACCAATCAAAACCAAAGCATCAGCCCAAAGTCGCAACCATTTTGATGTTCCCAGCACCAGCACAGTACCAAACTTGGGAGGCCTTCCATGA 1977 0.4375 MFSFSCFHAHVSVNKPKKTVPPYTEEMMMALKGGPRSKVSKGSSVPRKSNPKAEQEHMQLSDNETSSNWDPVERTCKSEDLNSEFSFEIDGDVLQTMGLKKSHSLETGLYLTNTLTESXXHVGFPWIDSTRSQNESPRSICRKEHDPSDQCNKNPESEYQFSSGLVSPSDRDACDHSDTPLSSELAGDYTDRSGPGTPYLKKSRSLPNVRASKDYSGEDTFKHHSSKSRSSNDLHALDMGQKECRDEERENEFRRDNEIHMESYLDDGLDSSPLSDSAKDWVMPVMDDASEIKPLQRASSDDCFLSEFTNADFKIKRIEDWVIGLEDCEPPLDETNEVPKPVDSLVESNITIGVTAAGTDQRATPGMEAAKRYISTLGANASAAQLVNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHVLNLSRNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTILDLRFNKISTAKCLGQLAANYNSLQAISLEGNPSQKNVGDEQLKKYLQGLLPHLVYYNRQPLKASSLKDGTDRSVRLGISSHQSERSLRTDRKTSRKGSHGTVASRKPSASSSHPRRSQGVETPKLSKSRQAYPPPIKTKASAQSRNHFDVPSTSTVPNLGGLP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0705 658 Pfam Leucine rich repeat 402 457 IPR001611 GO:0005515
Amo03g0705 658 MobiDBLite consensus disorder prediction 153 167 - -
Amo03g0705 658 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Amo03g0705 658 SUPERFAMILY Outer arm dynein light chain 1 394 554 - -
Amo03g0705 658 ProSiteProfiles Leucine-rich repeat profile. 446 468 IPR001611 GO:0005515
Amo03g0705 658 ProSiteProfiles Leucine-rich repeat profile. 469 490 IPR001611 GO:0005515
Amo03g0705 658 MobiDBLite consensus disorder prediction 632 658 - -
Amo03g0705 658 Pfam Leucine Rich repeat 491 503 IPR001611 GO:0005515
Amo03g0705 658 SMART LRR_typ_2 444 467 IPR003591 -
Amo03g0705 658 SMART LRR_typ_2 400 423 IPR003591 -
Amo03g0705 658 SMART LRR_typ_2 489 511 IPR003591 -
Amo03g0705 658 MobiDBLite consensus disorder prediction 595 620 - -
Amo03g0705 658 MobiDBLite consensus disorder prediction 559 658 - -
Amo03g0705 658 SMART LRR_sd22_2 467 488 - -
Amo03g0705 658 SMART LRR_sd22_2 444 466 - -
Amo03g0705 658 SMART LRR_sd22_2 489 513 - -
Amo03g0705 658 SMART LRR_sd22_2 422 443 - -
Amo03g0705 658 MobiDBLite consensus disorder prediction 137 152 - -
Amo03g0705 658 PANTHER NISCHARIN RELATED 6 647 - -
Amo03g0705 658 MobiDBLite consensus disorder prediction 215 236 - -
Amo03g0705 658 MobiDBLite consensus disorder prediction 29 74 - -
Amo03g0705 658 Gene3D Ribonuclease Inhibitor 354 541 IPR032675 -
Amo03g0705 658 MobiDBLite consensus disorder prediction 126 236 - -
Amo03g0705 658 PANTHER BNAA09G01440D PROTEIN 6 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0705 Amo-Chr3 12946273 12950670 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0705 - - gmx:100790061 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1944 13 29213774 29218088 Amo03g0705 03 12946273 12950670 hybridization