Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1888 AGAACCTTTCATTCACTCATCACTCTCTCTTACTCCCTCTTTTGTTCTCTCCTCATTCTCATAAGATCCTTTTCTCCTGCTTATAAAGCATTTATAATGTCTAAGGAGGTGTCGTTGTTTTTGGGATTGGTTATGGGGTTTGTGTTTGTTGGAGTGGCTTTTGCTGCTGCCACTGCCAAGTTTGAAGAACTCTTCCAACCAAGTTGGGCTTTAGACCATTTCATTCATGAAGGAGACCTTCTCAAACTCAAGCTTGATAACTATTCCGGTGCTGGGTTTGTATCCAAAAGCAAGTATATGTTTGGGAAAGTTACCGTCCAACTTAAACTTGTTGAAGGTGATTCTGCCGGAACAGTTACTGCTTTCTATATGTCATCGGAGGGTCCAAATCACAACGAGTTTGATTTTGAGTTCCTGGGGAACACCACAGGGGAACCTTACTCTGTTCAAACAAATGTGTATGTGAATGGAGTGGGAAATAGAGAGCAAAGGCTAAACCTTTGGTTTGACCCTACTAAAGACTTTCATTCTTACTCTTTCTTTTGGAACCAACGTCAAGTTATATTTCTAGTGGATGAAACACCAATAAGGGTGCACACAAACATGGAACACAGGGGTATTCCATTTCCAAAGGACCAAGCAATGGGTGTTTATAGCTCAATTTGGAACGCTGATGATTGGGCCACACAAGGTGGAAGAGTGAAAACTAATTGGAGCCATGCACCTTTCATTGCAACATATAAGGCCTTTGAGATCAATGCTTGCGAGTGTCCAATAGTGTCATCAAAATCAGTGGAAAATTTGAAGAGGTGTAGTAGTAATGAGAAGAAGTATTGGTGGGATGAGCCTAATTTGGGTGTGTTAAGTTTGCATCAAAGTCACCAACTTATGTGGGTTAGGGCCAAACATATGGTTTATGATTATTGTGCTGATACTGCTAGGTTCCCTGTTATGCCTGCTGAGTGTGTTCATCATAGTCACCACAAACTAGTGCTCAAAAATTAG 1005 0.4109 RTFHSLITLSYSLFCSLLILIRSFSPAYKAFIMSKEVSLFLGLVMGFVFVGVAFAAATAKFEELFQPSWALDHFIHEGDLLKLKLDNYSGAGFVSKSKYMFGKVTVQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSFFWNQRQVIFLVDETPIRVHTNMEHRGIPFPKDQAMGVYSSIWNADDWATQGGRVKTNWSHAPFIATYKAFEINACECPIVSSKSVENLKRCSSNEKKYWWDEPNLGVLSLHQSHQLMWVRAKHMVYDYCADTARFPVMPAECVHHSHHKLVLKN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1888 334 PIRSF EndGlu_transf 26 327 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo13g1888 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 37 326 IPR044791 GO:0004553
Amo13g1888 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 37 326 - -
Amo13g1888 334 SUPERFAMILY Concanavalin A-like lectins/glucanases 61 325 IPR013320 -
Amo13g1888 334 PRINTS Glycosyl hydrolase family 16 signature 167 184 IPR008264 GO:0004553|GO:0005975
Amo13g1888 334 PRINTS Glycosyl hydrolase family 16 signature 149 162 IPR008264 GO:0004553|GO:0005975
Amo13g1888 334 PRINTS Glycosyl hydrolase family 16 signature 91 109 IPR008264 GO:0004553|GO:0005975
Amo13g1888 334 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 52 247 IPR000757 GO:0004553|GO:0005975
Amo13g1888 334 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 275 322 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo13g1888 334 Gene3D - 47 328 - -
Amo13g1888 334 Pfam Glycosyl hydrolases family 16 63 239 IPR000757 GO:0004553|GO:0005975
Amo13g1888 334 CDD GH16_XET 56 322 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1888 Amo-Chr13 28072785 28075289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1888 91 327 Glycoside Hydrolase AT4G03210 72.574 1.40e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1888 K08235 - gmx:100801567 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1888 13 28072785 28075289 Amo03g0759 03 14900698 14903238 hybridization
Amo13g1888 13 28072785 28075289 Amo08g1142 08 18997863 18999593 PCT