Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1142 ATGTCTAAGATGTCTAGTCTCTTGGGATTCTTTGTGGGTCTAGTTTTGGTGGGGGTTGTTGCCTCTTCCAAGTTTGAAGAACTCTACCAACCTGCTTGGGCCTTGGATCATTTCATCCACGATGGCGAACTCATTAAACTCAAGCTTGATAACTATTCAGGTGCTGGTTTTGGATCAAAGAGCAAATATATGTTTGGGAAAGTGAGCATCCAACTTAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCTTTCTATATGTCATCGGAGGGTCCAAATCACAACGAATTTGATTTTGAGTTCTTGGGGAACACTACTGGTGAGCCTTATTCGGTGCAGACGAATGTGTATGTGAATGGTGTTGGTAACAGGGAGCAGAGACTCGACCTATGGTTCGATCCCACCAAGGACTTCCACACCTACTCTATCTTCTGGAATCAACGCCAAGTTGTGTTCCTAGTGGACGATACGCCAATAAGGGTGCACACAAACCTTGAACACAAGGGAATCCCTTTCCCTAAAGACCAAGCAATGGGAGTGTACAGCTCAATATGGAACGCAGATGATTGGGCCACACAGGGTGGTAGGGTGAAGACAGATTGGAGCCATGCACCATTCGTTGCCACATACAAGGACTTCACGATTGACGCGTGTGAGTGCCCAGTGGGAGTGTCATCGTCATCAGTGGCCCCGGAAAATGCTAAGAGGTGCAGTAGCAGCGAGGATAAGAAGTATTGGTGGGATGAACCAACCATGTCGGAGTTGAACGTTCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTATTGCACTGATACTGCTAGGTTCCCAGTCACACCCGCTGAGTGTGTCCACCACCGTCACTAA 888 0.4797 MSKMSSLLGFFVGLVLVGVVASSKFEELYQPAWALDHFIHDGELIKLKLDNYSGAGFGSKSKYMFGKVSIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLDLWFDPTKDFHTYSIFWNQRQVVFLVDDTPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFTIDACECPVGVSSSSVAPENAKRCSSSEDKKYWWDEPTMSELNVHQSHQLMWVRANHMVYDYCTDTARFPVTPAECVHHRH* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1142 295 Pfam Glycosyl hydrolases family 16 28 203 IPR000757 GO:0004553|GO:0005975
Amo08g1142 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo08g1142 295 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Amo08g1142 295 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Amo08g1142 295 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Amo08g1142 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18 293 - -
Amo08g1142 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 18 293 IPR044791 GO:0004553
Amo08g1142 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 294 IPR013320 -
Amo08g1142 295 Gene3D - 14 295 - -
Amo08g1142 295 CDD GH16_XET 21 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo08g1142 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 211 IPR000757 GO:0004553|GO:0005975
Amo08g1142 295 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1142 Amo-Chr8 18997863 18999593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1142 55 295 Glycoside Hydrolase AT4G03210 76.763 1.85e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1142 K08235 - gmx:100801567 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1888 13 28072785 28075289 Amo08g1142 08 18997863 18999593 PCT
Amo03g0759 03 14900698 14903238 Amo08g1142 08 18997863 18999593 PCT