Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1860 ATGGGTTCTCCTCCTTCAAACCATGTCTATGATGTTGATGAACCTTTGCTAACACCTTCAACACCACCACAACCTCTGCAAAATTTATCATTTAGTTCGAAGCACGATGAATCATCAAATACTGGTGAACTTGAGAGGATACTGTCAGACACAAGTGTTCCTCTTTCAAAGAGAGTTGGAGCAGCAACATGGATTGAGTTAAAGTTACTATTTTACCTTGCTGCCCCTGCAGTTATAGTGTATCTCATTAACTATGTTATGTCCATGTCCACACAAATATTCTCTGGTCATCTTGGTAATCTTGAGCTTGCTGCTGCTTCCCTTGGAAACACTGGCATCCAAGTCTTTGCCTACGGCCTCATGTTGGGGATGGGTAGTGCTGTAGAGACATTATGTGGACAAGCATACGGGGCACAAAAATTCGAAATGCTTGGAGTATATCTACAAAGATCAACAATCCTTTTATCAATAGCAGGTATAGTCCTAACATTCATCTACATATTCTCGGAGCCCATTTTGGTCTTTTTAGGAGAATCCCCAAGAATCGCATCGGCAGCAGCACTTTTCGTGTACGGCCTAATCCCACAAATATTTGCGTACGCCGTAAACTTCCCAATCCAGAAGTTTCTACAGGCACAAAGCATAGTGGCACCGAGCGCGTACATCTCAACCGCGACGTTGGCGATTCACGTGCTGTTGAGTTGGTTGGTGGTGTACAAGGTGGGGTTGGGTTTGTTAGGAGCGTCGTTGGTGTTGAGCTTTTCGTGGTGGGTGATAGTGGTGGCGCAGTTTGTGTACATTGTGAAGAGYGAGAGGTGTAAGGACACGTGGCGGGGGTTTAGCGTTCAAGCGTTTTCCGGGCTGCCGGAGTTTTTTAAGCTGTCTGCTGCTTCGGCTGTGATGCTGTGTCTTGAGACGTGGTACTTTCAGATTCTTGTTCTGCTTGCTGGCTTGTTGCCTCACCCTGAGTTGGCCCTTGATTCACTTTCTATTTGTACCACGGTGTCTGGATGGGTGTTCATGATCTCAGTAGGATTTAACGCTGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCTAGGAATCCAAGATCAGCATCATTCTCAGTGGTGGTAGTGACAGTGATATCATTCGTGTTATCAGTGATAATAGCAATAGTGGTTCTATTATTGAGGGATGTCATAAGCTATGTCTTCACCGAAGGAGAAGAGGTTGCTGCTGCTGTCTCTGATCTCTGCCCTCTCCTCGCTCTTTCCATTGTCCTCAACGGCATTCAGCCCGTCTTATCCGGGGTGGCCGTTGGATGTGGATGGCAAACTTTCGTTGCATATGTAAACGTTGGTTGCTACTATGGAGTTGGCATACCATTGGGCTCGGTTCTTGGTTTCTATTTTAAGCTCAGTGCCAAGGGAATATGGATTGGAATGCTCGGTGGCACGGTTTTGCAAACACTTATTTTGATGTGGGTCACATTTCGAACGGATTGGACTAAAGAGGTTGAAGAAGCATCAAAGAGGTTGAATAAGTGGGACGAAAATAAGGAGCCACTTCTGAAGAACTGA 1563 0.4587 MGSPPSNHVYDVDEPLLTPSTPPQPLQNLSFSSKHDESSNTGELERILSDTSVPLSKRVGAATWIELKLLFYLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAQKFEMLGVYLQRSTILLSIAGIVLTFIYIFSEPILVFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISTATLAIHVLLSWLVVYKVGLGLLGASLVLSFSWWVIVVAQFVYIVKSERCKDTWRGFSVQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGARNPRSASFSVVVVTVISFVLSVIIAIVVLLLRDVISYVFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGVGIPLGSVLGFYFKLSAKGIWIGMLGGTVLQTLILMWVTFRTDWTKEVEEASKRLNKWDENKEPLLKN* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1860 520 TIGRFAM matE: MATE efflux family protein 76 473 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo13g1860 520 PANTHER PROTEIN DETOXIFICATION 25 507 - -
Amo13g1860 520 MobiDBLite consensus disorder prediction 23 37 - -
Amo13g1860 520 Pfam MatE 298 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo13g1860 520 Pfam MatE 76 236 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo13g1860 520 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 507 - -
Amo13g1860 520 MobiDBLite consensus disorder prediction 1 43 - -
Amo13g1860 520 CDD MATE_eukaryotic 66 502 IPR045069 GO:0042910|GO:1990961
Amo13g1860 520 Coils Coil 493 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1860 Amo-Chr13 27514898 27520269 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1860 K03327 - gmx:100801718 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1860 13 27514898 27520269 Amo13g1860 13 27514898 27520269 ECH
Amo08g1187 08 19555980 19560506 Amo13g1860 13 27514898 27520269 PCT
Amo13g1860 13 27514898 27520269 Amo08g1187 08 19555980 19560506 PCT