Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1187 ATGGGTTCTGTAAACAAAGAGTCCCATGAACCACTCCTAGCTCCTCTTCATCACCACCGATCATTCACCGAAGCTGGTGCCGGAGATGGAGAACTTGAAAGGATACTCTCCGACACCTCCCAGCCACTCCTCAAGCGCCTTGGACCCGCCACGTGGATCGAGCTCAAGCTCCTGTTCTTCTTGGCTGCTCCGGCCGTCGTCGTCTACCTCATCAACTACCTGATGTCTATGTCCACGCAAATCTTCTCCGGCCACCTCGGCACCCTGGAGCTGGCTGCCGCTTCCCTTGGCAACACCGGCATCCAAATCTTCGCTTATGGACTGATGTTGGGAATGGGGAGTGCTGTTGAGACGCTATGCGGGCAAGCATTCGGTGCTCAGAGATTCGAGATGCTTGGGGTGTACCTTCAAAGATCAACGGTGCTGCTTTCACTAGCAGGCGTGGTGTTAACGGTGATCTACGTGTTCAGCGAACCAATCCTGGTGTTCCTGGGAGAATCACCAAGAATCGCATCAGCGGCAGCGCTCTTCGTGTACGGACTAATCCCTCAAATCTTCGCGTACGCGGTGAACTTCCCGATTCAGAAGTTCCTTCAGGCGCAGAGCATCGTGGCGCCGAGCGCCTACATCTCGGCTGCGACGCTGGTTCTGCACCTGATAGTGAGCTGGGTGGTGGTGTACAAGGTGGGGCTGGGGCTTCTTGGAGCGTCGTTGGTTCTGAGCTTGTCGTGGTGGATAATTGTGATAGCGCAGTTTGTGTACATTGTGAAGAGTGAGAGGTGCAAGGACACGTGGCGGGGTTTCAGTACGCAAGCGTTCTCCGGGCTGCCGCAGTTCTTTAAGCTTTCGGCGGCGTCGGCGGTGATGCTCTGCCTTGAGACTTGGTATTTCCAGATCCTCGTCTTGCTTGCTGGCTTGCTCCCTCACCCTGAGCTCGCCCTCGATTCTCTCTCCATCTGTACCACAATATCCGGGTGGGTGTTCATGATATCTGTTGGATTCAACGCAGCTGCCAGCGTGAGGGTGAGCAATGAACTGGGAGCATCAAATCCAAGATCAGCATCATTCTCAGTGGTGGTTGTGACAATAATTTCATTCATAATATCAGTGATTGCGGGACTTGTGATACTTGCACTGAGGGATGTGATTAGCTATGCCTTCACTGAAGGGGAAGAGGTGGCTGCTGCTGTATCTGATCTTTGCCCTCTCCTCTCATTTGCCATTGTCTTGAATGGCATTCAGCCCGTACTCTCAGGGGTGGCTGTTGGATGTGGATGGCAAACATTTGTGGCATATGTCAATGTTGGTTGCTACTATGGAATTGGTATCCCATTGGGTGCCCTTCTCGGCTTCTATTTCAATTTTGGTGCTAAGGGAATATGGCTGGGAATGTTAGGTGGAACCGCAATGCAAACAATTATTTTGGTGTGGGTCACATTTCGAACCAATTGGCATAAAGAGGTAGAAGAAGCAGCTAAGAGGTTGAGCAAATGGGAGGTGGAGAAGAATAAGCCAATTCTTGACTGA 1527 0.52 MGSVNKESHEPLLAPLHHHRSFTEAGAGDGELERILSDTSQPLLKRLGPATWIELKLLFFLAAPAVVVYLINYLMSMSTQIFSGHLGTLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAQRFEMLGVYLQRSTVLLSLAGVVLTVIYVFSEPILVFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISAATLVLHLIVSWVVVYKVGLGLLGASLVLSLSWWIIVIAQFVYIVKSERCKDTWRGFSTQAFSGLPQFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGASNPRSASFSVVVVTIISFIISVIAGLVILALRDVISYAFTEGEEVAAAVSDLCPLLSFAIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGALLGFYFNFGAKGIWLGMLGGTAMQTIILVWVTFRTNWHKEVEEAAKRLSKWEVEKNKPILD* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1187 508 PANTHER MULTIDRUG RESISTANCE PROTEIN 14 494 - -
Amo08g1187 508 TIGRFAM matE: MATE efflux family protein 64 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo08g1187 508 Pfam MatE 64 224 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo08g1187 508 Pfam MatE 286 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo08g1187 508 PANTHER PROTEIN DETOXIFICATION 14 494 - -
Amo08g1187 508 CDD MATE_eukaryotic 54 490 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1187 Amo-Chr8 19555980 19560506 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1187 K03327 - gmx:100801718 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1187 08 19555980 19560506 Amo13g1860 13 27514898 27520269 PCT
Amo13g1860 13 27514898 27520269 Amo08g1187 08 19555980 19560506 PCT