Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0308 ATGGACTACTCAATCTCTTCCGCCTCCGACCACGACGCCCATACTCCGCCGCATCAGGATTCTTCCAACCCTGAAACCTCCGCAAACGGCGGAACCATCACTGTTCAGCTGTTCGTGGAGGAAGGTGAGGTTGAACCGGGAGAGGTCCGAGTCACTATCGAACCCGGTTCAGACGCCGCTGCTGCGTCTTCCTCGGGGAGGAGGGCCGGTTTGGAGGTCGAACCGGAAGCTCCATCGAGCCCTAGCAGCAGCGGTTACGTCGGCGAGAGAGGAAGCAGCAGCAGCAGCGACACCAGCGGTTCGCCAATTATACCGATCGCGCGCGAAATTGAAGAGGAGATGAGTAGGGAAGTTGATGATATCACACTCCATGGATTCTCCGACGCCCAAACGGCGTGGATTCCTGGAAAACGACATGTCGATGAGGATGATGCTTCCATTTCTTGGAGAAAAAGGAAGAAGCATTTCTTTGTTCTCAGTCATTCTGGCAAGCCAATATACTCTAGGTATGGAGATGAGTATAAGCTTGCAGGATTTTCAGCGACTTTGCAGGCAATCATTTCCTTTGTGGAGAGCAGGGGTGATTCTGTGAAATGGGTGAGGGCTGGAAAGCATCAGGTTGTTTTTCTTGTGAAAGGGCCAATTTATTTGGTCAGCATCAGCTGTACAGAAGAACCTTATGAGTCATTAAGGGGGCAGTTGGAGCTAATTTATGGTCAGATACTTGTTATACTAACAAAATCAGTAAACAGATGCTTCGAGAAGAACCCAAAGTTTGATATGACACCCTTGCTCGGTGGAACAGACATTGTCTTTTCCTCTCTAATCCATTCCTTCAGTTGGAATCCTGCTACATTTCTTCATGCCTATACTTGTCTTCCTCTAGCATATGCAACAAGGCAAGCTGCAGGTGCTATCTTGCAAGACATTGCCGATTCAGGTGTTTTGTTTGCAATTCTGATGTGCCGGCACAAGGTAATCAGTCTTGTTGGTGCTCAGAAAGCTTCCCTTCATCCAGATGATATGCTGCTGCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACATCAGAGTCGTTTTCTCCAGTTTGCCTTCCAAGATATAATCCTTCAGCATTTTTGTATGCTTATATCCATTATTTTGATGCTGACACATACTTGATGCTGCTAACCACTAGTTCAGATGCATTTTATCATCTTAAAGATTGCAGGGTTCGTGTTGAATTGGTCCTTTTGAAGTCAAATGTTCTTAGTGAAGTTCAGAGATCTTTGCTGGATGGGGGAATGCATGTTGGGGATCTTCCACCCATAGCTCAGTCTGGTTCATCTCAGTTGGGCCCGCACAGGCTTCCATCTGATTCTCCTGAAAGATTCCTGGAACCTAATTCCGCCATTGACTGTCCTGCAGGGTTGTGGCATTTTATATACTTCAGTATATATCTGGATCAATATGTCTCTTCAGAGTTTCCACCATCCATTAAAACACCTCAGCAGCAAAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAATGGTATTGGACTGCACAAAACTCAATTTCGGAGAGATGAAAACTACGTTCTTCTCTGTTGGGTGACACAAGATTTTGAGCTGTATGCTGCCTTTGATCCCCTTGCGGACAAGGCATCGGCAATAAAGACATGCAACCGTGTTGTTCAATGGATAAAAGACGTGGAAAATGAATTTTTTTGCTAG 1734 0.4579 MDYSISSASDHDAHTPPHQDSSNPETSANGGTITVQLFVEEGEVEPGEVRVTIEPGSDAAAASSSGRRAGLEVEPEAPSSPSSSGYVGERGSSSSSDTSGSPIIPIAREIEEEMSREVDDITLHGFSDAQTAWIPGKRHVDEDDASISWRKRKKHFFVLSHSGKPIYSRYGDEYKLAGFSATLQAIISFVESRGDSVKWVRAGKHQVVFLVKGPIYLVSISCTEEPYESLRGQLELIYGQILVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDIADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSESFSPVCLPRYNPSAFLYAYIHYFDADTYLMLLTTSSDAFYHLKDCRVRVELVLLKSNVLSEVQRSLLDGGMHVGDLPPIAQSGSSQLGPHRLPSDSPERFLEPNSAIDCPAGLWHFIYFSIYLDQYVSSEFPPSIKTPQQQKRLYRAYQKLFASMHDNGIGLHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKASAIKTCNRVVQWIKDVENEFFC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 206 220 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 310 323 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 534 548 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 154 171 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 359 382 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 550 563 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 257 269 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 286 307 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 334 350 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 563 577 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 172 192 IPR004353 GO:0006623
Amo13g0308 577 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 387 413 IPR004353 GO:0006623
Amo13g0308 577 MobiDBLite consensus disorder prediction 77 102 - -
Amo13g0308 577 PANTHER BNAC04G15860D PROTEIN 44 576 - -
Amo13g0308 577 MobiDBLite consensus disorder prediction 19 34 - -
Amo13g0308 577 PANTHER SAND PROTEIN-RELATED 44 576 IPR004353 GO:0006623
Amo13g0308 577 MobiDBLite consensus disorder prediction 1 102 - -
Amo13g0308 577 Pfam Second Longin domain of FUZ, MON1 and HPS1 315 408 IPR043971 GO:0016192
Amo13g0308 577 Pfam First Longin domain of FUZ, MON1 and HPS1 154 274 IPR043972 GO:0016192
Amo13g0308 577 Pfam Third Longin domain of FUZ, MON1 and HPS1 471 572 IPR043970 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0308 Amo-Chr13 4224871 4229311 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0308 K20195 - gmx:100814534 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0308 13 4224871 4229311 Amo13g0308 13 4224871 4229311 ECH
Amo18g0490 18 6331385 6337037 Amo13g0308 13 4224871 4229311 PCT
Amo13g0308 13 4224871 4229311 Amo18g0490 18 6331385 6337037 PCT