Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3445 ATGAAAGGGGCGGTGGCCGCGGCGGAGACAATGGTGGTGGCATTGCTGAATTTGATAGTGTTGGTGTGTTTGGGCATGTCACTTATGATGTTTGTTGAGAGAATGTATTTAGGAGTTGCCATTTGCTTTGTGAAGCTCTTTGGTAGAAAACCAGAGAAGCGTTACAAATGGGTGCCTATTAAAGATGACATTGAATTTGGAAACTCCACTTACCCTATGATTCTTGTTCAAATACCAATGTATAATGAAAGGGAGGTTTATCAATTATCAATTGGTTCAGCTTGTGGACTTTCTTGGCCTTCAGATAGGATCATCATACAAGTTCTTGATGATTCAACTGACCCAACAATCAAAGAGTTGGTAGAAGTTGAATGTGCAAAATGGGAAAAGAAAGGAATTAACATAAAGTATGAATATAGAGGCAATAGAAATGGATACAAAGCTGGGGCGTTAAGAGATGGAATGAAACTAAGTTATGCAAAACAATGTGATTATGTTGCTATCTTTGATGCTGATTTTCAACCTCAACCTGATTTTCTTTGGCGCACTATTCCATTCTTAGTCAACAATTCTCAATTGGCTTTAGTACAAGCAAGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACTAGGATGCAAGAGATATCACTGGATTACCACTTCATTGTGGAACAAGAAGTAGGGTCTTCCATGTATTCCTTTTTTGGCTTCAATGGGACTGCTGGTGTATGGAGAATTTCAGCCATCAATGAGGCTGGTGGATGGAAGGATAGGACCACGGTAGAAGATATGGACCTTGCTATTCGAGCCACTCTCCAAGGATGGAAATTTTTATATCTACATAATTTACAGGTTAAAAATGAATTGCCAAGCACTTTAAAGGCTTACCGCTACCAACAACACCGATGGTGTTGTGGACCAGCCAATCTTTTCAGGAAAATGTTCGTAGAGATTATTACAAACAAGAAAGTGTGTTTATGGAAGAAGATACATGTGATTTATAGCTTCTTCTTTGTTCGGAAGGTTGTGGCTCATTTCAACACATTTGTGTTTTATTGCATTGTGTTGCCATCAACAGTTTTGGTTCCTCAGATTGTTGTGCCAAAATGGGGTTCTCTATATCTTCCTTTCATAATCACAATTCTAAATGTACTTGCAAGTCCAAGGTCACTCCACTTACTAGTTTTCTGGATTGTGTTTGAGAATACAATGTCTCTTCATAGAACAAAGGCAACAATAATTGGCTTAATAGAGGGTAGTCGAGTCAATGAATGGATTGTCACTCAAAAACTTGGAGATCCACTCAAAGGTAAAATTGACAATAATAAACCACACAACAAGCCTCGATTCATCAGAATAAGAAACAGGATCCACATGTTGGAACTTGTTGTTGGATTATACTTATTCTTCTGTGGCTGCTTTGATCTCTTGCTTGGGACAAAACGCTTCTTCATATTCCTTCACATTCAAGCATTTGCTTTCTTCATTATGGCATTTGGATATGTTGGCACTTTCATACCCAACTCTTATTAA 1536 0.3828 MKGAVAAAETMVVALLNLIVLVCLGMSLMMFVERMYLGVAICFVKLFGRKPEKRYKWVPIKDDIEFGNSTYPMILVQIPMYNEREVYQLSIGSACGLSWPSDRIIIQVLDDSTDPTIKELVEVECAKWEKKGINIKYEYRGNRNGYKAGALRDGMKLSYAKQCDYVAIFDADFQPQPDFLWRTIPFLVNNSQLALVQARWKFVNADECLMTRMQEISLDYHFIVEQEVGSSMYSFFGFNGTAGVWRISAINEAGGWKDRTTVEDMDLAIRATLQGWKFLYLHNLQVKNELPSTLKAYRYQQHRWCCGPANLFRKMFVEIITNKKVCLWKKIHVIYSFFFVRKVVAHFNTFVFYCIVLPSTVLVPQIVVPKWGSLYLPFIITILNVLASPRSLHLLVFWIVFENTMSLHRTKATIIGLIEGSRVNEWIVTQKLGDPLKGKIDNNKPHNKPRFIRIRNRIHMLELVVGLYLFFCGCFDLLLGTKRFFIFLHIQAFAFFIMAFGYVGTFIPNSY* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3445 511 CDD CESA_CaSu_A2 72 308 - -
Amo12g3445 511 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 9 509 - -
Amo12g3445 511 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 65 291 IPR029044 -
Amo12g3445 511 PANTHER - 9 509 - -
Amo12g3445 511 Pfam Glycosyl transferase family group 2 165 364 IPR001173 -
Amo12g3445 511 SUPERFAMILY Nucleotide-diphospho-sugar transferases 69 351 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3445 Amo-Chr12 123615687 123622699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3445 11 509 Miscellaneous Gene Families AT5G03760 71.743 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3445 K13680 - gmx:100810016 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3445 12 123615687 123622699 Amo12g3445 12 123615687 123622699 ECH
Amo06g1540 06 47449641 47457346 Amo12g3445 12 123615687 123622699 PCT
Amo12g3445 12 123615687 123622699 Amo06g1540 06 47449641 47457346 PCT