Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1540 ATGGATGGGGTTTCGTTTGAAGGCGCAAAGGATGACATAACAATGCAGTTTGCAATGGTGTGGAGCCAGATCAAAGCGCCATTGATAGTTCCAATGCTGAGGATCGCGGTGTTTTTATGCTTGATCATGTCGGTGATGATGTTCATAGAGAGAGTGTATATGGGCATTGTGATTAGTCTCGTGAAATTGTTTGGAAGAAGGCCTGAGAAGCGTTACAAGTGGGAGCCAATGAAGGACGATGTTGAGTTAGGAAACTCTTCTTACCCCATGGTTCTTGTTCAGATTCCTATGTACAATGAAAGAGAGGTTTATCAGCTTTCAATTGGAGCTGCATGTGGACTCTCTTGGCCTTCTGATAGGATCATTGTACAAGTTCTTGATGACTCCACTGATCAAGCAATCAAGGAATTGGTGCAGATAGAATGCCAAAGGTGGGCAAGCAAAGGTGTGAACATAAAGTATGAAGTGAGGGACAACAGGAACGGATACAAAGCAGGGGCTCTCAAAGAAGGCATGAAACGAAGCTATGTTAAGCAATGCGATTACGTTGCCATTTTCGACGCTGATTTTCAGCCTGAGCCTGATTTCTTGTGGCGAACCATCCCATTCTTAGTGCACAATCCTGAGCTTGCTCTCGTTCAGGCTCGTTGGAAATTTGTGAATTCCGATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACAGTGGAACAAGAAGTGGGCTCTTCCAGTTATGCCTTCTTTGGTTTCAACGGGACTGCTGGAGTATGGAGAATTGCGGCGCTAAATGAGGCTGGTGGGTGGAAAGATAGGACCACAGTGGAGGATATGGACCTTGCTGTCCGAGCTAGTCTCAAGGGATGGAAATTCTGTTACCTCTCCGATTTGAAGGTTAAAAATGAGTTGCCAAGTACTTTGAAGGCCTACCGTTACCAACAGCACCGTTGGTCTTGTGGGCCCGCCAATCTTTTCAGGAAGATGGTTTTGGAAATTATCAGAAACAAGAAAGTGTCAACTTGGAAGAAGGTACATGTGATTTACAGCTTCTTCTTCGTTAGGAAAGTTATAGCACACATCAACACGTTTGTGTTCTACTGCATCGTGTTACCTGCGACCGTTGTGGTTCCTGAGGTTGTGGTTCCAAAATGGGGTGCTGTCTATATCCCTTCTGTCATCACCCTTCTAAATGCAGTTGGAACTCCAAGGTCGCTCCATTTACTTGTGTTCTGGATTCTCTTTGAGAATGTCATGTCTCTTCATAGAACAAAGGCGACAATTATTGGTTTACTCGAGGCTAGCCGAGTCAACGAATGGGTTGTCACTGAAAAGCTTGGAGATGCTCTCAAGAGTAAAGCCGGAGGTAAAGTAGCATCGAAGAAGCCTCGATTCAAGATTGGAGACAGGTTTCACTTGTTGGAACTTGGTGTGGGATTTTACCTCTTCTTCTGTGGCTGTTACGATGTTATGTTCGGGAAGAACCACTACTTCATCTTCCTTTTCATCCAAGCAATTGCGTTTTTCATCATGGCATTTGGATATGTTGGCACCTTTGTTCCCACCTCGTAA 1581 0.4466 MDGVSFEGAKDDITMQFAMVWSQIKAPLIVPMLRIAVFLCLIMSVMMFIERVYMGIVISLVKLFGRRPEKRYKWEPMKDDVELGNSSYPMVLVQIPMYNEREVYQLSIGAACGLSWPSDRIIVQVLDDSTDQAIKELVQIECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDYVAIFDADFQPEPDFLWRTIPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSSYAFFGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRASLKGWKFCYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVLEIIRNKKVSTWKKVHVIYSFFFVRKVIAHINTFVFYCIVLPATVVVPEVVVPKWGAVYIPSVITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKSKAGGKVASKKPRFKIGDRFHLLELGVGFYLFFCGCYDVMFGKNHYFIFLFIQAIAFFIMAFGYVGTFVPTS* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1540 526 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 5 525 - -
Amo06g1540 526 Pfam Glycosyltransferase like family 2 90 324 - -
Amo06g1540 526 SUPERFAMILY Nucleotide-diphospho-sugar transferases 86 367 IPR029044 -
Amo06g1540 526 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 305 IPR029044 -
Amo06g1540 526 CDD CESA_CaSu_A2 89 325 - -
Amo06g1540 526 PANTHER - 5 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1540 Amo-Chr6 47449641 47457346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1540 5 525 Miscellaneous Gene Families AT5G03760 80.998 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1540 K13680 - gmx:100782772 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g1540 06 47449641 47457346 Amo12g3445 12 123615687 123622699 PCT
Amo12g3445 12 123615687 123622699 Amo06g1540 06 47449641 47457346 PCT