Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2871 ATGGCGCCAAAGAGAGGGATTTCGTTCTCAAGGAGCAGAAGCAGCAGCGGCAAGTTGTCGTCATCATCTTCGTCATCGTCATCGCATTTTCCTGTTTTGGCGTTCGTGATTCTCTGTGTTATGGCTCCGATGATTTTCTTCCTCGGAAGAGGCCTCTACGCTGCGGATCAAGATGATTTTTCAGCAGTTCCAAGTAATCAGGTTGTCACATGGAGAGGATGGCAAGCATTGCAGAATCTTAAATCATTTTTTCCAAAAGAGGTTCTTGATGTTATCGTATCCAGCACAAATGATACAGGGCCTTTGAGTCTTGATAATTTCAGAAAAAATAATATGTCTGCCTCTTGGAGAGTGGTGGAGTTGGAGACTTCAAATGCCACAAATGAGCCCAAAATAGAGGACAGACAAGAGAAACCAAAGCTGAAGGATGGAAAATCTTCAGATGGTCGTACTCGGTGGATTGATAGTCCTACGCAACAAGCCAGAAGGGTGAGCATCATTCTTTTAACGTTGTATTGTGAGCAATTAATAGGGAAAAGGCGGGATAGGCGTGCTGCTGAGTTGGTAAAATTGAACGATGAATTAATCGCAAAACTTGAAAATGCAGCTATTGAACGCTCAAAATCTGTTGAGTCAGCTGTTCTAGGAAAATACAGCATTTGGAGGAAAGAAGTTGAGTATGAAAATGCTGATTCTACTGTTCGGTTGATGCGGGACCAAAACATTATGGCTAGGGTATATTTAAGTATTGCAAAGATGAAGAACAAGCTTGAACTTTTCCAAGAACTGCAAACTCGGCTAAAAGAGAGTAAACGTGCTTTAGGCGATGCTACTTCTGATGCTGATCTAAATCGCAGTGCCCATGAAAAGATAAAGGCTATGGGTCAAGTCCTGTCAAAAGCAAGAGAACAATTGTATGACTGCAAATTGGTATCTGGGAAACTAAGGGCAATGCTACAAACTGCCGATGAGCATGTTCGGAGCTTTAAGAAACAGAGCACATTTCTCAGTCAGTTGGCTGCAAAGACGATACCTAACGGAATCCATTGCTTATCTATGCGTCTTACTATAGATTACTACCTTCTTCCACCGGAAAAGAGAAAGTTCTCTGGGAGTGAGAACTTGGAGGATCCCAGTTTTTATCATTATGCACTGTTTTCAGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTACGAATGCTAAGGATCCTTCAAAGCATGTTTTTCATCTTGTTACTGACAAACTAAATTTTGGAGCCATGAACATGTGGTTTCTGTTGAACCCACCTGGAAAAGCTACAATTCATGTTGAAAATGTCGATGAATTTAAGTGGTTGAACTCATCCTACTGCCCAGTCCTGCGGCAGCTAGAATCTGCAACAATGAGAGAGTATTATTTTAAGGCAGGCCATCCGAACACACTTTCTTCTGGTGCTTCAAATCTGAAGTACAGAAACCCCAAATATCTGTCAATGCTCAACCATCTGAGATTCTACCTTCCACAAGTTTATCCAAAATTGGATAAGATCCTTTTTCTCGATGATGACATCGTTGTCCAGAAGGATTTGACTGGTTTGTGGGCTGTGAATCTCCAAGGTAAAGTAAATGGTGCAGTCGAAACATGTGGTGCGAGCTTTCACCGATTTGACAAGTATCTGAACTTTTCAAATCCACATATTGCAAGAAATTTTGATCCGAATGCTTGTGGCTGGGCATATGGAATGAACATATTTGATCTGAAGGAGTGGAAAAAGAAGGATATCACTGGCATATATCACAAGTGGCAGAATATGAATGAAGACAGGGTGCTGTGGAAGCTGGGTACATTACCCCCGGGGCTAATGACATTCTATGGTCTCACGCATCCGCTAAATAAATCATGGCACGTTCTTGGTTTGGGTTATAATCCAAGCGTAGATCGATCCGAGATTGATAGTGCAGCAGTTGTACATTACAATGGCAACATGAAACCATGGTTGGAGATTGCCATGACAAAGTATAGGTCTTACTGGTCCAAATATGTGAAGTATGATCATCCCTATCTTCGGAACTGTAAGCTACATGAGTAA 2079 0.417 MAPKRGISFSRSRSSSGKLSSSSSSSSSHFPVLAFVILCVMAPMIFFLGRGLYAADQDDFSAVPSNQVVTWRGWQALQNLKSFFPKEVLDVIVSSTNDTGPLSLDNFRKNNMSASWRVVELETSNATNEPKIEDRQEKPKLKDGKSSDGRTRWIDSPTQQARRVSIILLTLYCEQLIGKRRDRRAAELVKLNDELIAKLENAAIERSKSVESAVLGKYSIWRKEVEYENADSTVRLMRDQNIMARVYLSIAKMKNKLELFQELQTRLKESKRALGDATSDADLNRSAHEKIKAMGQVLSKAREQLYDCKLVSGKLRAMLQTADEHVRSFKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFSGSENLEDPSFYHYALFSDNVLAASVVVNSTITNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESATMREYYFKAGHPNTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWAVNLQGKVNGAVETCGASFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLKEWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYNPSVDRSEIDSAAVVHYNGNMKPWLEIAMTKYRSYWSKYVKYDHPYLRNCKLHE* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2871 692 Coils Coil 250 280 - -
Amo12g2871 692 SUPERFAMILY Nucleotide-diphospho-sugar transferases 381 689 IPR029044 -
Amo12g2871 692 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 24 692 IPR029993 GO:0047262
Amo12g2871 692 MobiDBLite consensus disorder prediction 127 150 - -
Amo12g2871 692 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 383 684 IPR029044 -
Amo12g2871 692 CDD GT8_like_1 381 679 - -
Amo12g2871 692 PANTHER HEXOSYLTRANSFERASE 24 692 - -
Amo12g2871 692 MobiDBLite consensus disorder prediction 1 27 - -
Amo12g2871 692 MobiDBLite consensus disorder prediction 127 153 - -
Amo12g2871 692 MobiDBLite consensus disorder prediction 8 27 - -
Amo12g2871 692 Coils Coil 185 205 - -
Amo12g2871 692 Pfam Glycosyl transferase family 8 350 666 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2871 Amo-Chr12 115337836 115343308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2871 1 692 Glycosyltransferase AT3G61130 71.960 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2871 K13648 - gmx:100811181 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2871 12 115337836 115343308 Amo12g2871 12 115337836 115343308 ECH
Amo04g2254 04 93637242 93642427 Amo12g2871 12 115337836 115343308 PCT
Amo12g2871 12 115337836 115343308 Amo04g2254 04 93637242 93642427 PCT