Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2254 ATGGCGTCCACCAACAGCGGGAACAAGGGATCACGTTTCCCACTTCTCGCGTTCCTTCTCATCTGCCTCCTCGCTCCTCTCCTCTTCTTCTTCTTCTCGAGAGGCCTTCACAATGCTCCCGATCAAGATGTTATGTCAACCGTTCCTAGTAAACAGGTTGCCAAATGGACAGAATGGCAGACACTGCAGGACCTTAAATTGTATTTTTCAAAAGAGGCTCTTGATGTTATTGTATCGAGCACAGATGATTTGGGTCCTTTGAGCCTTGAGAATTTCAAAAAAAATAATTTGTTACCTTCATGGAGAATCACTGGGTTAAAGACTTCAAATGCTACCTATGAGCTAAACCAACCAACAACACATGGTGTACAGGAAAAACAAGAGGTGAAGGAAGGCAGATCTTCAGTTGGTCTTGATCAATGGACTCTTAGTCCTGTCCACTTATCCAGAAGGCACTTAATAGAGAAAAGGAAGGAAAAACGTGCTGCTGAGTTGGTGAAACTGGAGGATGAAGTAATTGTAAAACTTGAAGATTCAGCTATTGAACGCTCAAAGACAGTAGATTCAGCAGTTTTAGGTAAATACAACATGTGGAGGAAAGAAAATGACAATGAAAATGCTGATTCTACTATTCGGTTGATTCGAGACCAAATTGTTATGGCTAGAGTGTATTTGAGCCTTGCAAAGATGAAGAACAAGCTTGACCTGTACCAAGAGCTGCAAAATCGGATTGGAGAGAGTCAGCATGATTTAGGTGAGGCAACTGCTGATGCTGATCTACCTAAAAGTGCACATGAAAAAATCAAAGCCATGGGTCAAGTCCTGTCTAAAGCAAAAGATCAATTGTATGACTGCAAGTTGGTCACTGGGAAATTGAGGGCAATGCTACAAACAGCTGATGAGCAAGTTAGGGGCCTGAAAAAGCAAAGTACATTCCTCAGTCAGTTGGCTGCCAAGACCATACCTGATGGAATCCACTGCTTATCGATGCGCCTTACCATTGATTATTACCTCCTTTCTCCTGAAAAGAGAAAGTTTCCTAAGAGTGAGAATTTGGAGAATCCTAATCTTTATCATTATGCCCTTTTCTCAGACAATGTCTTGGCTGCATCAGTGGTTGTCAACTCAGCTATTATGAATGCAAAGGATCCTTCAAAGCATGTTTTTCATCTTGTTACTGATAAGCTAAATTTCGGAGCCATGAACATGTGGTTTTTGTTGAACCCTCCTGGAAAAGCTACTATCCATGTTGAAAATGTTGATGAATTTAAGTGGTTGAATTCATCTTACTGCCCTGTCTTGAGGCAGCTCGAATCTGCAACAATGAAAGAGTATTATTTCAAGGCAGGCCATCCAACATCCGGTGGTTCCTCTAATCTGAAGTACAGAAACCCGAAATATCTCTCAATGCTCAACCATCTTAGGTTCTATCTTCCGCAAGTTTATCCAAAATTGGATAAGATTCTTTTTCTTGATGATGACATTATTGTCCAGAAGGATTTGACAGGATTATGGGCCGTGAATCTTCATGGAAAAGTAAATGGTGCCGTTGAAACATGTGGGGAGAGTTTTCACCGTTTCGACAAGTATCTTAACTTTTCGAATCCTCATATTGCTAAAAATTTTGATCCCAATGCCTGTGGTTGGGCTTATGGAATGAACATGTTTGATTTAAAGGAGTGGAAAAAGAAGGATATTACCGGCATATATCACAAGTGGCAGAATATGAATGAAGATAGGGTGTTATGGAAGCTGGGGACATTACCTCCAGGTCTAATGACATTCTATGGATTGACGCATCCACTAAACAAATCATGGCACGTACTTGGTTTAGGTTACAATCCGAGTGTAGATAAATCTGAGATCGACAATGCGGCAGTTATTCACTACAATGGTAATATGAAGCCATGGCTAGAGATAGCCATGACAAAATACCGGTCGTATTGGACCAAATATGTCAAGTATGATCATCCCTATCTTAGAAACTGTAAGCTAACTGAATGA 2004 0.4077 MASTNSGNKGSRFPLLAFLLICLLAPLLFFFFSRGLHNAPDQDVMSTVPSKQVAKWTEWQTLQDLKLYFSKEALDVIVSSTDDLGPLSLENFKKNNLLPSWRITGLKTSNATYELNQPTTHGVQEKQEVKEGRSSVGLDQWTLSPVHLSRRHLIEKRKEKRAAELVKLEDEVIVKLEDSAIERSKTVDSAVLGKYNMWRKENDNENADSTIRLIRDQIVMARVYLSLAKMKNKLDLYQELQNRIGESQHDLGEATADADLPKSAHEKIKAMGQVLSKAKDQLYDCKLVTGKLRAMLQTADEQVRGLKKQSTFLSQLAAKTIPDGIHCLSMRLTIDYYLLSPEKRKFPKSENLENPNLYHYALFSDNVLAASVVVNSAIMNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESATMKEYYFKAGHPTSGGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIIVQKDLTGLWAVNLHGKVNGAVETCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYNPSVDKSEIDNAAVIHYNGNMKPWLEIAMTKYRSYWTKYVKYDHPYLRNCKLTE* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2254 667 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 361 661 IPR029044 -
Amo04g2254 667 CDD GT8_like_1 358 654 - -
Amo04g2254 667 Coils Coil 237 257 - -
Amo04g2254 667 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 7 667 IPR029993 GO:0047262
Amo04g2254 667 Pfam Glycosyl transferase family 8 327 641 IPR002495 GO:0016757
Amo04g2254 667 PANTHER HEXOSYLTRANSFERASE 7 667 - -
Amo04g2254 667 SUPERFAMILY Nucleotide-diphospho-sugar transferases 358 664 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2254 Amo-Chr4 93637242 93642427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2254 10 667 Glycosyltransferase AT3G61130 75.643 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2254 K13648 - gmx:100798073 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2254 04 93637242 93642427 Amo12g2871 12 115337836 115343308 PCT
Amo12g2871 12 115337836 115343308 Amo04g2254 04 93637242 93642427 PCT