Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2573 ATGGCTCACCACCAACTCATCGACTCGCTCACCTCTCACATCTCCCTCTACCACTCCCATTCCCAATCCCAATCCTCAAACCCTAACCCTAACCCTAGATCCCAAATTTTCAAATGGTTTTCATCCCTCTCCCTCCAACACCGTCAATCCGCACTCACCATCGTCGATCCAACCTTCGTCCAAACTCTCCTCCGCATGATCTCCAAGCTCCGATCCAACGGCCATGGCTCCTTCATTGTTCTTCCTGACCTTCCCTCCACTCATCCTCCATTCCTCCCCACTCTCTGCTTCAAGCGCTCCCGTGGCCTCCTTGCACGCGCTGCCGATTCCGCCGACTCGGCCGTGGCCGGGCGGGTTCTGTTTGACTCCGCCCGGCTGTTCGAGTCGGCCGAGGGAAATGAAGGCGCCGGGGCGTGCTCCTGTTCCGCGGCTTGCCTTGACGCCTTTACCGTTGCTGAGAATTTGGTGGATGACATTGACCGGTTTGTGGACGTTATGGACCGAATTTCCAATGGCGGGTTCTTGAGAGGGGAGGAGAATGAGATTGGGAATAATTGGGTGGAGCTGAATTGGCTAAAGGCAATGGGGTATTATCGGATTGAGGCGTTTTTGGCGAATAGGATTGAGGTTGCGATGCGGCTGGCATGGTTGAATAGTGGAGGAGGAGCTGGAGGGGGAGGAGGGAGGAAAAGAGGTGTTAAATTGAAGGAGAAGATGAATTTGGCCGGGGTCGCAGCGAATGTGTTTTGGAGGAAGAAGGGATGTGTGGATTGGTGGAGTAATCTGGATGCTGTGACAAGGAAGAGGGCCTTAACAACAATTTTGAGCAGAGCTGCAAAACCTTTGACTCGTGAAATTTTGGAAGTGGCACATAATGCCTCTCAGGATGAGATTTGGCTATACAGTGTGGGAGTTGATAAATTTCTTCAATATAACGGTACTGCATCTGCTCAAAGGACCACCAGAGCATTTCCCAATGATGTAGAACTTGGAACAGTTGTTACACCATTAGCTTTTTGTAACAAACCACCTGCTTTAGCCAGAGCCCTTAATTCTTTGCTCGTGCTTCTAGATGTTAATATGGTGATAACGTCAGTTCTTAATATTGACTACGATATAGGAGAGCTATTCTTTAGTTCATTGGGTTCTGTCTGTACTGTTTCTGATTGTATATTGCGAAAAATACGAGGACTCCTAATGGTTATATCACTGGACTGCACAAAATTTGAACTTCTATCAGAGGAGCTTGATAAATCTTCATCAGGAAGGTCTAAGGAAAAGCCTAGTGCGTTTAATCGTAAAAAGAAGGGACGAACCCGCAACACTAAGAAGCAAAATCATGTCCCTTTCACATGTGTGAATGGTATTTCACATGAAAGGCTACAAAAGGACATTGATTGTTTAGTGGATAATGAAAAGAAGGCTGATTTAGTGGGATCCAAGGAACCTCCTAATGATCATCTTGGAAAGGAGATTTCTACTGGGAGCATATCGTCAACTGCAAAAAAGGATCATACTCGGCGGTTGGACGCTAACAAACTTCGAACTAATTCAAGAAAAAGTAGGAAAGAGAAAAATAAATGTAAAAACACAACCACTGGCCGTGAAGCTAGCAATTTTCAAAAGTCCATTATAGATGCTGCCTCTACGACTGTTATTTTTGAAGGTGAGGTGGGAATATGTGATATGGTTTTTGATAAATCTTCCATTAATGCCAAAAATGATTATTTGAATGGTAGTGACATCCACTCCTCAAGTACAAAGAACAGTTTTGCCGAGGCGATTGAGCAAGAAAATGTTGAGTATCTTTCTAAAAGTTGCAATGGTTTAGGTCCTCAGCTTTGTTTAGCATCAAATCAAGGGAAAACTATGTCTCAGGAAATAGATTGTTCAACTTGTGATGTAGATTGTAATGCTCAAAATCCTCCGGCACATGAATTGAAGCATGGTAGTTTCTACAGTAAAGAAGATACAGGTTCTCTTAACTCCGTCTGTGTTCCAGAAGCTGATGTAAAGCCATCTGTTCCTGACAAACTAACCAGAGAGGTTTATGTAAAGGAGTTTGGGCTATTGAAGGAGCGAGATAGATGCCTATTTGAATGTAGAAATTCAGCTTTCTCTAAATGTAGTCCATATGAGTGGCCTGGTGTACCTTCTGTATATTTTCCATCTTTTAATTCTCATCTCCCTCCTGCTACTGATAGATTGCATTTGGATGTTGGGCGGAATTGGCATAATCACTTTTGCCACTCATTTGTTCCCACATTACAGCAGGCAAGAAACACTCCTATTGAAGGTGGACGCAACCCAATACTGTCTCGTCCTATTCCTATGAGTTTAGACTGGCCTCCTGTTTTTCGTGGTGGCATGGCTGCACCGCCAAACGGTAATTATGATTCGGGTTTTATGACCCGGCGGCAGTGTACCTTTTCAAAAGGATTGGCTGTTCACAGCGTCCAGGTTGATGCAACAACTCCAGATGATGAAAGAAAATATTCTGGGGATATATTTGATTTACCTCCTGATATAGCAAATGCGCAAGAGCTAGCAGATGAATTTGACAATCATTGGGTATCAGAAGAAGAGTACGAGGTTCATGCTGTTTCTGGAATAGATTATAACCAATATTTCGGTGGTGGCATAATGTATTGGAACTCTTCTGATTATCCAGGAAATGGTTTCTCCCGGCCACCCTCTCTTAGCTCTGATGACAGTTTATGGGCTCTGCGTGAAGCTGATATGAATAGGGCAGTGGATGACATGGTTGCTTTCTCATCTTCATATAGTACAAATGGTCTGACTTCACCCACTGCTGCTGCCTTTTGTTCGCCTTTTGATCCTGTAGGGACTGGTCCTCAAACTGTCAGTTATGTGATGTCAAGTAATGAAGTACCTGGAAAGGTATTGCATTCTTCCTCTGTTACAGATGCTGCAGGGGATGAAGATACTTCTGGTTCTTTGGGTAATAATTTATCTGGGGAAATGGAAGGAAAGGCGGGTGATTCACATCCATATCCCATTCTACGCCCAATAATTATTCCTAATTTATCAAGGGAAAGGTCAAGATCTGACTTTAAGCGCAGTGTTGACCATAAAAGCCCTTGTGTTCCCCCGACAAGGCGGGAGCAGCCTCGTATAAAGCGGCCACCATCACCTGTAGTGCTTTGTGTTCCACGGGCTCCACGTCCACCTCCACCGTCCCCTGTGAGTGACTCCAGGAAACAAAGGGGTTTCCCTAGTGTTAGATCTGGTAGTTCCAGCCCAAGGCATTGGGGAATGAGAGGTTGGTATCATGATGGAAGTAATTTGGATGAAGCTTGCCTAAGAATGGATGGTGCCGAAGTTGTTTGGCCGTCTTGGAGAAGCAATAATCTTGCAGTGAGATCTATGATTCAGCCTTTACCTGCAGCCCTTCTGCAGGACCGCCTGATTGCTATGTCACAGATACCACGTGACCAGGAGCATCCCGACGTGACCATTCCTTTGCAACCTCCCGAGTTACAAAGCTGTTCTGCACGGAGTTCATCTTTGTCTTTGATGCATGGCCTTCTCCATGATGAGATTGATTCTTTCTGTAAACAGGTTGCTGCAGAAAATTTGAGTAGGAGGCCTTACATTAATTGGGCTGTCAAGAGAGTTACCAGATCTCTGCAGGTTCTGTGGCCAAGATCCAGGACAAATGTATTTGGTTCAAATGCAACTGGCATGTCTCTTCCCACAAGTGATGTTGACCTTGTGGTTGTCCTCCCTCCAGTGAGGAACCTGGAACCTATTAAAGAAGCTGGAATACTTGAAGGTCGTAATGGTATCAAAGAAACATGTCTTCAGCATGCAGCTAGGTATCTTGCCAACCAGGATTGGGTTAAGAGTGACTCACTGAAGACAGTGGAAAACACAGCTATACCTATTATTATGCTTGTTGTGGAAGTACCTCAGGAGGTTATATCTTCTTCTATGGTACAATCATTAAAGGAAGAACCACACTGTACTCATAATGAACATGGTAATGACAGTCATTCTGATGCTATCCAATTAGAAGATTCATCTTTTCCTAATAGTTCTGGAATAAATTTTGATGCCTCCAAAGAGTCCAAATCAGTTCGACTTGACATCAGCTTTAAGTCACCATCACATACGGGACTCCAAACAACAGAAATGGTTAAGGCATTGACAGACCAATTTCCTGCTGCTATTCCACTTGCTTTGGTACTGAAACAATTTTTGGCAGACCGGAGCCTTGATCAGTCCTACTCTGGTGGCTTAAGTTCGTATTGTTTGGTTTTACTAATTATACGTTTTCTTCAGCATGAGCACCATCTCGGCCGGTCAATCAACCAAAGCTATGGAAGCCTTCTAATGGATTTTCTTTACTTTTTTGGGAATGTGTTTGATCCTCGACAAATGCGGATATCAGTGCAGGGAAGTGGGCTCTACATAAAAAGAGAAAGAGGTTGTAGTATTGATCCAATACACATAGATGATCCTCTTTATCCAACAAATAATGTTGGAAGGAATTGCTTCAGGATACATCAATGCATTAAGGCATTTTCAGAAGCTTATTCTGTTCTTGAGAATGAACTCACATTCCTAAACAGTGATGGCGAATCATGTTCAAAGCCACCTTACAGACTGCTTCCAAAAATCATCCCTAATCTTGATGTATCAAACTCATAA 4674 0.4392 MAHHQLIDSLTSHISLYHSHSQSQSSNPNPNPRSQIFKWFSSLSLQHRQSALTIVDPTFVQTLLRMISKLRSNGHGSFIVLPDLPSTHPPFLPTLCFKRSRGLLARAADSADSAVAGRVLFDSARLFESAEGNEGAGACSCSAACLDAFTVAENLVDDIDRFVDVMDRISNGGFLRGEENEIGNNWVELNWLKAMGYYRIEAFLANRIEVAMRLAWLNSGGGAGGGGGRKRGVKLKEKMNLAGVAANVFWRKKGCVDWWSNLDAVTRKRALTTILSRAAKPLTREILEVAHNASQDEIWLYSVGVDKFLQYNGTASAQRTTRAFPNDVELGTVVTPLAFCNKPPALARALNSLLVLLDVNMVITSVLNIDYDIGELFFSSLGSVCTVSDCILRKIRGLLMVISLDCTKFELLSEELDKSSSGRSKEKPSAFNRKKKGRTRNTKKQNHVPFTCVNGISHERLQKDIDCLVDNEKKADLVGSKEPPNDHLGKEISTGSISSTAKKDHTRRLDANKLRTNSRKSRKEKNKCKNTTTGREASNFQKSIIDAASTTVIFEGEVGICDMVFDKSSINAKNDYLNGSDIHSSSTKNSFAEAIEQENVEYLSKSCNGLGPQLCLASNQGKTMSQEIDCSTCDVDCNAQNPPAHELKHGSFYSKEDTGSLNSVCVPEADVKPSVPDKLTREVYVKEFGLLKERDRCLFECRNSAFSKCSPYEWPGVPSVYFPSFNSHLPPATDRLHLDVGRNWHNHFCHSFVPTLQQARNTPIEGGRNPILSRPIPMSLDWPPVFRGGMAAPPNGNYDSGFMTRRQCTFSKGLAVHSVQVDATTPDDERKYSGDIFDLPPDIANAQELADEFDNHWVSEEEYEVHAVSGIDYNQYFGGGIMYWNSSDYPGNGFSRPPSLSSDDSLWALREADMNRAVDDMVAFSSSYSTNGLTSPTAAAFCSPFDPVGTGPQTVSYVMSSNEVPGKVLHSSSVTDAAGDEDTSGSLGNNLSGEMEGKAGDSHPYPILRPIIIPNLSRERSRSDFKRSVDHKSPCVPPTRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKQRGFPSVRSGSSSPRHWGMRGWYHDGSNLDEACLRMDGAEVVWPSWRSNNLAVRSMIQPLPAALLQDRLIAMSQIPRDQEHPDVTIPLQPPELQSCSARSSSLSLMHGLLHDEIDSFCKQVAAENLSRRPYINWAVKRVTRSLQVLWPRSRTNVFGSNATGMSLPTSDVDLVVVLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQDWVKSDSLKTVENTAIPIIMLVVEVPQEVISSSMVQSLKEEPHCTHNEHGNDSHSDAIQLEDSSFPNSSGINFDASKESKSVRLDISFKSPSHTGLQTTEMVKALTDQFPAAIPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRSINQSYGSLLMDFLYFFGNVFDPRQMRISVQGSGLYIKRERGCSIDPIHIDDPLYPTNNVGRNCFRIHQCIKAFSEAYSVLENELTFLNSDGESCSKPPYRLLPKIIPNLDVSNS* 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2573 1557 PANTHER NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN 670 1551 - -
Amo12g2573 1557 Pfam Nucleotidyltransferase domain 1210 1254 IPR002934 GO:0016779
Amo12g2573 1557 Gene3D - 1357 1549 - -
Amo12g2573 1557 PANTHER POLY(A) RNA POLYMERASE 670 1551 IPR045862 GO:0004652|GO:0031499|GO:0043631
Amo12g2573 1557 MobiDBLite consensus disorder prediction 1326 1346 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 1326 1341 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 976 991 - -
Amo12g2573 1557 Gene3D Beta Polymerase, domain 2 1201 1318 IPR043519 -
Amo12g2573 1557 SUPERFAMILY Nucleotidyltransferase 1185 1389 IPR043519 -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 1054 1070 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 501 517 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 1019 1094 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 417 446 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 1019 1047 - -
Amo12g2573 1557 SUPERFAMILY PAP/OAS1 substrate-binding domain 1395 1528 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 429 443 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 974 1006 - -
Amo12g2573 1557 Pfam Cid1 family poly A polymerase 1447 1500 IPR002058 -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 1073 1087 - -
Amo12g2573 1557 MobiDBLite consensus disorder prediction 478 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2573 Amo-Chr12 109612916 109624843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2573 - - mtr:MTR_4g027425 2108.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2573 12 109612916 109624843 Amo12g2573 12 109612916 109624843 ECH
Amo12g2573 12 109612916 109624843 Amo02g2711 02 84105652 84117500 hybridization