Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2572 CTCTCTCTTCCCTCCTCCCTCTTCATTTGTCATTGTCATTTCTCTCCGCCACCACTCACTCAGCCATTGCGCCCTCCTTTCTTGCTTCTCCTCTTCTCCCGCTCTTCCTTCCTTCCTCCGCCATTGCTTTGTGTCTCTATCCCTCTCTCGAACATACACACACTCTCTTCAATGTTGACGCTGCAGCGATTTCTGTTTGAACCAATTCACAAGCCTTTCCTACTCAATCCTCCTTCTTCTAAAAAGCCGTCGTTTCAACAACACCGTGTTTGGAGCACCAGCATCATAAAGGGTGCAATAGCAGAGTTAGAAGGAGACCTAGAGCTTCCACCAAACGCGGTTCGGAGAAAGAGGGACCCAAATTGGAGAGGTGGCTTCAGCCTCGGAATTGATTTGGGCATGGCCCGCACTGGCCTCGCCCTCACTAAAGGCTTCAACATTCGCCCTTTAACCGTTTTGGAACTGCGAGGACAGAAGCTTGAGCTCAAGATAATTAACATAGCTGAACAACAGGAGGCTGATGAGTTCATAATTGGACTTCCGAGATCTTCTGATGGGAAGGAGACGCCGCAATCCAACATTGTTCGTAGTGTGGCAGGAAGACTCGCCGTTCGAGCTGCCGATAGGGGTTGGAGAGTATACCTACAGGATGAACATGGAACAACAACAGAGGCAGTAAATCGGATGATCACTATGGGTCTAAGTAAGTCCTCTCAGCAGAGGAAGCTTGATGCCTATGCTGCCATGATGGTATTGGAAAGATACCTATCCACATCAGGTCAGGGTACCGAACTTGTTTTGCCCAAGAACCTTGAATTACAAGAAAAACTTCGAAGGGGTCCTCCCAAAGATGCCGACTTTTTCTCGGATGAAGATTAA 879 0.4846 LSLPSSLFICHCHFSPPPLTQPLRPPFLLLLFSRSSFLPPPLLCVSIPLSNIHTLSSMLTLQRFLFEPIHKPFLLNPPSSKKPSFQQHRVWSTSIIKGAIAELEGDLELPPNAVRRKRDPNWRGGFSLGIDLGMARTGLALTKGFNIRPLTVLELRGQKLELKIINIAEQQEADEFIIGLPRSSDGKETPQSNIVRSVAGRLAVRAADRGWRVYLQDEHGTTTEAVNRMITMGLSKSSQQRKLDAYAAMMVLERYLSTSGQGTELVLPKNLELQEKLRRGPPKDADFFSDED* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2572 292 Hamap Putative pre-16S rRNA nuclease [yqgF]. 125 260 IPR005227 GO:0006364
Amo12g2572 292 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 95 291 IPR005227 GO:0006364
Amo12g2572 292 SMART rnase_8s 125 225 IPR006641 GO:0006139
Amo12g2572 292 SUPERFAMILY Ribonuclease H-like 126 258 IPR012337 -
Amo12g2572 292 Pfam Holliday junction resolvase 127 257 IPR005227 GO:0006364
Amo12g2572 292 Gene3D - 127 264 IPR037027 GO:0006139
Amo12g2572 292 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 128 256 IPR005227 GO:0006364
Amo12g2572 292 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 95 291 - -
Amo12g2572 292 CDD YqgF 128 256 IPR005227 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2572 Amo-Chr12 109610783 109612729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2572 - - gmx:100810356 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2572 12 109610783 109612729 Amo12g2572 12 109610783 109612729 ECH
Amo12g2572 12 109610783 109612729 Amo02g2712 02 84117544 84119699 hybridization