Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2712 CAGGCCTCCATCCTCCTCCGCTCTCTCTTCCCTCCTCCCTCTTCCTCTCCCATTGTCATTTCGCTCCGCCACCACTCACTCCGCCATTGCTGCCCTCCTTTCTTGCTTCTCCTCTTCTCCCGCTCTTCCTTCCTTCCTCCGCCATTGCTTTGTGTCTCTATCCCTCTCTCGAACATACACACACTCTCTTCAATGTTGACGCTGCAGCGATTTCTGTTTGAACCAATTCACAAGCCTTTCCTACTCAATCCTCCTTCTTCTAAAAAGCCGTCGTTTCAACAACACCGTGTTTGGAGCACCAGCATCATAAAGGGTGCAATAGCAGAGTTAGAAGGAGACCTAGAGCTTCCACCAAACGCGGTTCGGAGAAAGAGGGACCCAAATTGGAGAGGTGGCTTCAGCCTCGGAATTGATTTGGGCATGGCCCGCACTGGCCTCGCCCTCACTAAAGGCTTCAACATTCGCCCTTTAACCGTTTTGGAACTGCGAGGACAGAAGCTTGAGCTCAAGATAATTAACATAGCTGAACAACAGGAGGCTGATGAGTTCATAATTGGACTTCCGAGATCTTCTGATGGGAAGGAGACGCCGCAATCCAACATTGTTCGTAGTGTGGCAGGAAGACTCGCCGTTCGAGCTGCCGATAGGGGTTGGAGAGTATACCTACAGGATGAACATGGAACAACAACAGAGGCAGTAAATCGGATGATCACTATGGGTCTAAGTAAGTCCTCTCAGCAGAGGAAGCTTGATGCCTATGCTGCCATGATGGTATTGGAAAGATACCTATCCACATCAGGTCAGGGTACCGAACTTGTTTTGCCCAAGAACCTTGAATTACAAGAAAAACTTCGAAGGGGTCCTCCCAAAGATGCCGACTTTTTCTCGGATGAAGATTAA 900 0.4944 QASILLRSLFPPPSSSPIVISLRHHSLRHCCPPFLLLLFSRSSFLPPPLLCVSIPLSNIHTLSSMLTLQRFLFEPIHKPFLLNPPSSKKPSFQQHRVWSTSIIKGAIAELEGDLELPPNAVRRKRDPNWRGGFSLGIDLGMARTGLALTKGFNIRPLTVLELRGQKLELKIINIAEQQEADEFIIGLPRSSDGKETPQSNIVRSVAGRLAVRAADRGWRVYLQDEHGTTTEAVNRMITMGLSKSSQQRKLDAYAAMMVLERYLSTSGQGTELVLPKNLELQEKLRRGPPKDADFFSDED* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2712 299 Gene3D - 134 271 IPR037027 GO:0006139
Amo02g2712 299 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 102 298 - -
Amo02g2712 299 SUPERFAMILY Ribonuclease H-like 133 265 IPR012337 -
Amo02g2712 299 CDD YqgF 135 263 IPR005227 GO:0006364
Amo02g2712 299 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 135 263 IPR005227 GO:0006364
Amo02g2712 299 SMART rnase_8s 132 232 IPR006641 GO:0006139
Amo02g2712 299 Pfam Holliday junction resolvase 134 264 IPR005227 GO:0006364
Amo02g2712 299 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 102 298 IPR005227 GO:0006364
Amo02g2712 299 Hamap Putative pre-16S rRNA nuclease [yqgF]. 132 267 IPR005227 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2712 Amo-Chr2 84117544 84119699 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2712 - - gmx:100810356 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2572 12 109610783 109612729 Amo02g2712 02 84117544 84119699 hybridization