Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2423 ATGCAGAGATTCCATCTGGGTCTCTCTCAAAATCGAACCTTGATGATGGATTCAAGTGCCCCAAACACACCCTCCTTTCAGAACACCCCAGACTCTAACATCACCACCAACACTCTCTCTCCAAAGCCTTACAAGAAGAGCTTCGTCACCACTCTCATGGAGGCAGCAACACTCCGCACTCCTTCCTTCAAAGAAGACAACTACTTCGTCTCTCTCCTCAGACCCTCAGAGAGAAAGGCACTTCAAGAACTCAAGGAAAAGCTCAAAGCTTCTATTGACAGTAAGAATGGTGAAAATGATGGTGCTGTTATGTGGGGGATTCCACTCCTTGGTGGTGATGATCGTGCTGACGTCATACTCTTGAAGTTCCTTAGAGCAAGGGATTTTAGGGTTGCTGATGCACTCACCATGCTCCTTAAGTGCTTGCAATGGAGGAAGGACTTTGGTGCTGAAACCATTGTTGATGAGGATTTGGGATTCAAGGAGCTTGAAGGTGTGATAGCATATATGCAAGGGTATGACAAAGAAGGGCATCCAGTGTGTTACAATGCATATGGTGTTTTTAGGGATAAGGAAATGTATGAGAGGATCTTTGGTGATGAAGAGAAGCTGAAGAAGTTCCTTAGATGGAGGGTTCAGGTCCTTGAGAGGGGCATCAAGCTCCTACATTTCAAGGCTGGTGGGGTCAATTCCCTTATTCAGGTCACTGACCTTAAGGACATGCCCAAAAGGGAGCTTAGGGTTGCTTCTAACCACATCCTCTCCCTCTTCCAAGACAATTACCCAGAGATGGTGGCTCGCAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTCAGCCCGTTTCTGACTCAAAGAACCAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCTGAGACGCTCTACAAATTCATAAGGCCCGAGGATATTCCTGTTCAGTATGGAGGGCTGAATAGGCCCAGTGATTTGCAGAATGGTCCCCCAAAACCTGCTTCAGACTTCACTGTTAAAGGTGGAGAGAAAGTGAACATACAAATAGAAGGAATTGAGGCTGGTGCAACCATCACATGGGACATAGTGGTTGGAGGTTGGGACTTAGAATATAGTGCTGAGTTCGTACCAAATGCTGAAGGAAGCTACACCATAGCTGTTGAGAAGCCAAGAAAAGTTATGGCCTCAGAGGAAGCAATTCACAACTCATACACATCAAAGGAACCAGGCAAAATGGTACTCTCTGTTGATAACACTTCCTCGAGGAGGAAAAAGGTCGCGGCGTATCGCTACGTCGTCCGGAAATCCAGTAGTACCGTGTAA 1335 0.4599 MQRFHLGLSQNRTLMMDSSAPNTPSFQNTPDSNITTNTLSPKPYKKSFVTTLMEAATLRTPSFKEDNYFVSLLRPSERKALQELKEKLKASIDSKNGENDGAVMWGIPLLGGDDRADVILLKFLRARDFRVADALTMLLKCLQWRKDFGAETIVDEDLGFKELEGVIAYMQGYDKEGHPVCYNAYGVFRDKEMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKAGGVNSLIQVTDLKDMPKRELRVASNHILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLNRPSDLQNGPPKPASDFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKVMASEEAIHNSYTSKEPGKMVLSVDNTSSRRKKVAAYRYVVRKSSSTV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2423 444 Pfam CRAL/TRIO domain 164 323 IPR001251 -
Amo12g2423 444 CDD SEC14 160 324 IPR001251 -
Amo12g2423 444 SUPERFAMILY CRAL/TRIO N-terminal domain 73 157 IPR036273 -
Amo12g2423 444 SMART CRAL_TRIO_N_2 116 141 IPR011074 -
Amo12g2423 444 Gene3D GOLD domain 336 437 - -
Amo12g2423 444 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 156 329 IPR001251 -
Amo12g2423 444 Pfam CRAL/TRIO, N-terminal domain 80 139 IPR011074 -
Amo12g2423 444 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 341 439 IPR036598 -
Amo12g2423 444 PANTHER PATELLIN-1 36 441 IPR044834 GO:0008289
Amo12g2423 444 Gene3D - 155 335 IPR036865 -
Amo12g2423 444 PANTHER PATELLIN-6 36 441 - -
Amo12g2423 444 Coils Coil 78 98 - -
Amo12g2423 444 SMART sec14_4 162 326 IPR001251 -
Amo12g2423 444 Gene3D - 61 147 - -
Amo12g2423 444 MobiDBLite consensus disorder prediction 1 39 - -
Amo12g2423 444 ProSiteProfiles GOLD domain profile. 305 439 IPR009038 -
Amo12g2423 444 SUPERFAMILY CRAL/TRIO domain 161 326 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2423 Amo-Chr12 106686441 106690915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2423 120 295 Acyl Lipid Metabolism Gene Families AT5G47730 28.723 8.80e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2423 - - qsu:112015166 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2423 12 106686441 106690915 Amo12g2423 12 106686441 106690915 ECH
Amo12g2423 12 106686441 106690915 Amo02g2625 02 82557924 82561918 hybridization
Amo14g2922 14 124653710 124657114 Amo12g2423 12 106686441 106690915 PCT
Amo04g1850 04 85449102 85452908 Amo12g2423 12 106686441 106690915 PCT
Amo12g2423 12 106686441 106690915 Amo14g2922 14 124653710 124657114 PCT
Amo12g2423 12 106686441 106690915 Amo04g1850 04 85449102 85452908 PCT