Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2388 ATGGCTACAGCTACTGAAGTATTTACTGAGAAACCACTTCAAGGTGTTCCAATCCTTGCAAGAGAGCCTAGTTTCTCATCTTCACCAAGAAGGTTGGAAGGAAAAGTTGCTATTGTGACCGGTGGTGCTAAAGGGATAGGAGAAGCAACAGTGAGAATCTTTGTGAAGCATGGTGCAAAAGTTGTAATTGGTGATGTGGAAGATGAACTTGGAAAGTTGCTAGCTGAGGCATTATCCCCTTCAGTAAGCTATGTACATTGTGATGTTAGCAATGAAGAAGAAGTTGAGAATTTGGTGAATTACACAATCTCAATGTATGGTCAACTTGACATAATGTTTAACAATGCTGGGATCTTAGGGAACCAATCAAAGAACAAGAAGAGCATAGTCAACTTTGACCCTAATGAGTTTGACCAAGTTATGAGTGTTAATGTTAAGGGTATGGCCTTGGGGATTAAGCATGCAGCTAGGGCTATGATCCCAAGAGGAATTAAGGGTTGCATTATTTCAACTTCTAGTGTGGCTGGTGTTATGGGGGGTTTAGGGCCACATGCATATACAGCTTCTAAGCATGCCATTGTTGGACTCACTAAGAACACTGCTTGTGAGTTAGGGAGGTATGGAATTAGGGTTAATTGTATTTCACCATTTGGGGTTGCCACATCCATGCTTGTTAATGCATGGAGAAATTGTGATGATAATGATGATGATGGAATTAATTTTGGGTTGCCTTCAATTGAGGAAGTTGAGAAAATGGAAGGGTTTGTGAGAGGTTTGGCTAATTTGCAATGTACAAATTTAAGGCCTAGGGATATTGCTGAGGCAGCACTTTATCTTGCTAGTGATGAATCTAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGTGGTGTCACCTCCTCAAGAAATTGCATTGGTTTGTAA 924 0.4048 MATATEVFTEKPLQGVPILAREPSFSSSPRRLEGKVAIVTGGAKGIGEATVRIFVKHGAKVVIGDVEDELGKLLAEALSPSVSYVHCDVSNEEEVENLVNYTISMYGQLDIMFNNAGILGNQSKNKKSIVNFDPNEFDQVMSVNVKGMALGIKHAARAMIPRGIKGCIISTSSVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATSMLVNAWRNCDDNDDDGINFGLPSIEEVEKMEGFVRGLANLQCTNLRPRDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2388 307 Pfam short chain dehydrogenase 35 228 IPR002347 -
Amo12g2388 307 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 299 IPR036291 -
Amo12g2388 307 Gene3D - 24 305 - -
Amo12g2388 307 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Amo12g2388 307 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Amo12g2388 307 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
Amo12g2388 307 PRINTS Glucose/ribitol dehydrogenase family signature 186 205 IPR002347 -
Amo12g2388 307 PRINTS Glucose/ribitol dehydrogenase family signature 207 224 IPR002347 -
Amo12g2388 307 PRINTS Glucose/ribitol dehydrogenase family signature 262 282 IPR002347 -
Amo12g2388 307 CDD secoisolariciresinol-DH_like_SDR_c 31 299 IPR045309 GO:0016616
Amo12g2388 307 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 6 307 - -
Amo12g2388 307 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 6 307 - -
Amo12g2388 307 Pfam Enoyl-(Acyl carrier protein) reductase 246 299 - -
Amo12g2388 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Amo12g2388 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Amo12g2388 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2388 Amo-Chr12 106199814 106201470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2388 32 299 Miscellaneous Gene Families AT2G29330 28.000 7.70e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2388 - - gmx:100790562 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2388 12 106199814 106201470 Amo12g2388 12 106199814 106201470 ECH
Amo12g2388 12 106199814 106201470 Amo02g2659 02 83094839 83096542 hybridization
Amo12g2388 12 106199814 106201470 Amo14g2940 14 124980353 124982018 PCT