Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2659 ATGGCTACAGCTACTGAAGTATTTACTGAGAAACCACTTCAAGGTGTTCCAATCCTTGCAAGAGAGCCTAGTTTCTCATCTTCACCAAGAAGGTTGGAAGGAAAAGTTGCTATTGTGACCGGTGGTGCTAAAGGGATAGGAGAAGCAACAGTGAGAATCTTTGTGAAGCATGGTGCAAAAGTTGTAATTGGTGATGTGGAAGATGAACTTGGAAAGTTGCTAGCTGAGGCATTATCCCCTTCAGTAAGCTATGTACATTGTGATGTTAGCAATGAAGAAGAAGTTGAGAATTTGGTGAATTACACAATCTCAATGTATGGTCAACTTGACATAATGTTTAACAATGCTGGGATCTTAGGGAACCAATCAAAGAACAAGAAGAGCATAGTCAACTTTGACCCTAATGAGTTTGACCAAGTTATGAGTGTTAATGTTAAGGGTATGGCCTTGGGGATTAAGCATGCAGCTAGGGCTATGATCCCSAGAGGAATTAAGGGTTGCATTATTTCAACTTCTAGTGTGGCTGGTGTTATGGGGGGTTTAGGGCCACATGCSTATACAGCTTCTAAGCATGCCATTGTTGGACTCACTAAGAACACTGCTTGTGAGTTAGGGAGGTATGGAATTAGGGTTAATTGTATTTCACCATTTGGGGTTGCCACATCCATGCTTGTTAATGCATGGAGAAATTGTGATGATAATGATGATGATGATGGAATTAATTTTGGGTTGCCTTCAATTGAGGAAGTTGAGAAAATGGAAGGGTTTGTGAGAGGTTTGGCTAATTTGCAATGTACAAATTTAAGGCCTAGGGATATTGCTGAGGCAGCACTTTATCTTGCTAGTGATGAATCTAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGTGGTGTCACCTCCTCAAGAAATTGCATTGGTTTGTAA 927 0.4045 MATATEVFTEKPLQGVPILAREPSFSSSPRRLEGKVAIVTGGAKGIGEATVRIFVKHGAKVVIGDVEDELGKLLAEALSPSVSYVHCDVSNEEEVENLVNYTISMYGQLDIMFNNAGILGNQSKNKKSIVNFDPNEFDQVMSVNVKGMALGIKHAARAMIPRGIKGCIISTSSVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATSMLVNAWRNCDDNDDDDGINFGLPSIEEVEKMEGFVRGLANLQCTNLRPRDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2659 308 Pfam short chain dehydrogenase 35 228 IPR002347 -
Amo02g2659 308 CDD secoisolariciresinol-DH_like_SDR_c 31 300 IPR045309 GO:0016616
Amo02g2659 308 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 6 308 - -
Amo02g2659 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Amo02g2659 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Amo02g2659 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 IPR002347 -
Amo02g2659 308 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 6 308 - -
Amo02g2659 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 300 IPR036291 -
Amo02g2659 308 Pfam Enoyl-(Acyl carrier protein) reductase 247 300 - -
Amo02g2659 308 Gene3D - 24 306 - -
Amo02g2659 308 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Amo02g2659 308 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Amo02g2659 308 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
Amo02g2659 308 PRINTS Glucose/ribitol dehydrogenase family signature 186 205 IPR002347 -
Amo02g2659 308 PRINTS Glucose/ribitol dehydrogenase family signature 207 224 IPR002347 -
Amo02g2659 308 PRINTS Glucose/ribitol dehydrogenase family signature 263 283 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2659 Amo-Chr2 83094839 83096542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2659 32 300 Miscellaneous Gene Families AT2G29330 27.899 4.08e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2659 - - gmx:100790562 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2388 12 106199814 106201470 Amo02g2659 02 83094839 83096542 hybridization
Amo02g2659 02 83094839 83096542 Amo14g2940 14 124980353 124982018 PCT